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GP5 (glycoprotein V (platelet))

Identity

Alias_namesglycoprotein V (platelet)
Alias_symbol (synonym)CD42d
Other aliasGPV
HGNC (Hugo) GP5
LocusID (NCBI) 2814
Atlas_Id 63917
Location 3q29  [Link to chromosome band 3q29]
Location_base_pair Starts at 194115550 and ends at 194119995 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GP5   4443
Cards
Entrez_Gene (NCBI)GP5  2814  glycoprotein V (platelet)
AliasesCD42d; GPV
GeneCards (Weizmann)GP5
Ensembl hg19 (Hinxton) [Gene_View]  chr3:194115550-194119995 [Contig_View]  GP5 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr3:194115550-194119995 [Contig_View]  GP5 [Vega]
TCGA cBioPortalGP5
AceView (NCBI)GP5
Genatlas (Paris)GP5
WikiGenes2814
SOURCE (Princeton)GP5
Genetics Home Reference (NIH)GP5
Genomic and cartography
GoldenPath hg19 (UCSC)GP5  -     chr3:194115550-194119995 -  3q29   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GP5  -     3q29   [Description]    (hg38-Dec_2013)
EnsemblGP5 - 3q29 [CytoView hg19]  GP5 - 3q29 [CytoView hg38]
Mapping of homologs : NCBIGP5 [Mapview hg19]  GP5 [Mapview hg38]
OMIM173511   
Gene and transcription
Genbank (Entrez)BC152810 L11238
RefSeq transcript (Entrez)NM_004488
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929312
Consensus coding sequences : CCDS (NCBI)GP5
Cluster EST : UnigeneHs.73734 [ NCBI ]
CGAP (NCI)Hs.73734
Gene ExpressionGP5 [ NCBI-GEO ]   GP5 [ EBI - ARRAY_EXPRESS ]   GP5 [ SEEK ]   GP5 [ MEM ]
Gene Expression Viewer (FireBrowse)GP5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2814
GTEX Portal (Tissue expression)GP5
Protein : pattern, domain, 3D structure
UniProt/SwissProtP40197   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP40197  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP40197
Splice isoforms : SwissVarP40197
PhosPhoSitePlusP40197
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)Cys-rich_flank_reg_C    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp    LRR-contain_N   
Domain families : Pfam (Sanger)LRR_1 (PF00560)    LRR_7 (PF13504)    LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam00560    pfam13504    pfam13855   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  LRRCT (SM00082)  LRRNT (SM00013)  
Conserved Domain (NCBI)GP5
DMDM Disease mutations2814
Blocks (Seattle)GP5
SuperfamilyP40197
Peptide AtlasP40197
HPRD01431
IPIIPI00027410   
Protein Interaction databases
DIP (DOE-UCLA)P40197
IntAct (EBI)P40197
BioGRIDGP5
STRING (EMBL)GP5
ZODIACGP5
Ontologies - Pathways
QuickGOP40197
Ontology : AmiGOcollagen binding  plasma membrane  integral component of plasma membrane  cell adhesion  cell-matrix adhesion  blood coagulation  blood coagulation, intrinsic pathway  negative regulation of platelet activation  platelet activation  extracellular exosome  
Ontology : EGO-EBIcollagen binding  plasma membrane  integral component of plasma membrane  cell adhesion  cell-matrix adhesion  blood coagulation  blood coagulation, intrinsic pathway  negative regulation of platelet activation  platelet activation  extracellular exosome  
Pathways : KEGGECM-receptor interaction    Hematopoietic cell lineage   
NDEx NetworkGP5
Atlas of Cancer Signalling NetworkGP5
Wikipedia pathwaysGP5
Orthology - Evolution
OrthoDB2814
Phylogenetic Trees/Animal Genes : TreeFamGP5
HOVERGENP40197
HOGENOMP40197
Homologs : HomoloGeneGP5
Homology/Alignments : Family Browser (UCSC)GP5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGP5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GP5
dbVarGP5
ClinVarGP5
1000_GenomesGP5 
Exome Variant ServerGP5
ExAC (Exome Aggregation Consortium)GP5 (select the gene name)
Genetic variants : HAPMAP2814
Genomic Variants (DGV)GP5 [DGVbeta]
DECIPHER (Syndromes)3:194115550-194119995  
CONAN: Copy Number AnalysisGP5 
Mutations
ICGC Data PortalGP5 
TCGA Data PortalGP5 
Broad Tumor PortalGP5
OASIS PortalGP5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGP5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGP5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GP5
DgiDB (Drug Gene Interaction Database)GP5
DoCM (Curated mutations)GP5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GP5 (select a term)
intoGenGP5
Cancer3DGP5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM173511   
Orphanet
MedgenGP5
Genetic Testing Registry GP5
NextProtP40197 [Medical]
TSGene2814
GENETestsGP5
Huge Navigator GP5 [HugePedia]
snp3D : Map Gene to Disease2814
BioCentury BCIQGP5
ClinGenGP5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2814
Chemical/Pharm GKB GenePA28823
Clinical trialGP5
Miscellaneous
canSAR (ICR)GP5 (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGP5
EVEXGP5
GoPubMedGP5
iHOPGP5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:06:32 CET 2017

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