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GP9 (glycoprotein IX platelet)

Identity

Alias_namesglycoprotein IX (platelet)
Alias_symbol (synonym)CD42a
GPIX
Other alias
HGNC (Hugo) GP9
LocusID (NCBI) 2815
Atlas_Id 63919
Location 3q21.3  [Link to chromosome band 3q21]
Location_base_pair Starts at 129060767 and ends at 129062411 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GP9   4444
LRG (Locus Reference Genomic)LRG_477
Cards
Entrez_Gene (NCBI)GP9  2815  glycoprotein IX platelet
AliasesCD42a; GPIX
GeneCards (Weizmann)GP9
Ensembl hg19 (Hinxton)ENSG00000169704 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169704 [Gene_View]  chr3:129060767-129062411 [Contig_View]  GP9 [Vega]
ICGC DataPortalENSG00000169704
TCGA cBioPortalGP9
AceView (NCBI)GP9
Genatlas (Paris)GP9
WikiGenes2815
SOURCE (Princeton)GP9
Genetics Home Reference (NIH)GP9
Genomic and cartography
GoldenPath hg38 (UCSC)GP9  -     chr3:129060767-129062411 +  3q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GP9  -     3q21.3   [Description]    (hg19-Feb_2009)
EnsemblGP9 - 3q21.3 [CytoView hg19]  GP9 - 3q21.3 [CytoView hg38]
Mapping of homologs : NCBIGP9 [Mapview hg19]  GP9 [Mapview hg38]
OMIM173515   231200   
Gene and transcription
Genbank (Entrez)AA701315 BC030229 BM971739 DQ893337 DQ896655
RefSeq transcript (Entrez)NM_000174
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GP9
Cluster EST : UnigeneHs.1144 [ NCBI ]
CGAP (NCI)Hs.1144
Alternative Splicing GalleryENSG00000169704
Gene ExpressionGP9 [ NCBI-GEO ]   GP9 [ EBI - ARRAY_EXPRESS ]   GP9 [ SEEK ]   GP9 [ MEM ]
Gene Expression Viewer (FireBrowse)GP9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2815
GTEX Portal (Tissue expression)GP9
Protein : pattern, domain, 3D structure
UniProt/SwissProtP14770   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP14770  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP14770
Splice isoforms : SwissVarP14770
PhosPhoSitePlusP14770
Domains : Interpro (EBI)Cys-rich_flank_reg_C    L_dom-like    Leu-rich_rpt    LRRNT   
Domain families : Pfam (Sanger)LRR_8 (PF13855)    LRRNT (PF01462)   
Domain families : Pfam (NCBI)pfam13855    pfam01462   
Domain families : Smart (EMBL)LRRCT (SM00082)  LRRNT (SM00013)  
Conserved Domain (NCBI)GP9
DMDM Disease mutations2815
Blocks (Seattle)GP9
PDB (SRS)3REZ   
PDB (PDBSum)3REZ   
PDB (IMB)3REZ   
PDB (RSDB)3REZ   
Structural Biology KnowledgeBase3REZ   
SCOP (Structural Classification of Proteins)3REZ   
CATH (Classification of proteins structures)3REZ   
SuperfamilyP14770
Human Protein AtlasENSG00000169704
Peptide AtlasP14770
HPRD01432
IPIIPI00027502   
Protein Interaction databases
DIP (DOE-UCLA)P14770
IntAct (EBI)P14770
FunCoupENSG00000169704
BioGRIDGP9
STRING (EMBL)GP9
ZODIACGP9
Ontologies - Pathways
QuickGOP14770
Ontology : AmiGOprotein binding  plasma membrane  integral component of plasma membrane  cell adhesion  blood coagulation  blood coagulation, intrinsic pathway  platelet activation  
Ontology : EGO-EBIprotein binding  plasma membrane  integral component of plasma membrane  cell adhesion  blood coagulation  blood coagulation, intrinsic pathway  platelet activation  
Pathways : KEGGECM-receptor interaction    Hematopoietic cell lineage   
NDEx NetworkGP9
Atlas of Cancer Signalling NetworkGP9
Wikipedia pathwaysGP9
Orthology - Evolution
OrthoDB2815
GeneTree (enSembl)ENSG00000169704
Phylogenetic Trees/Animal Genes : TreeFamGP9
HOVERGENP14770
HOGENOMP14770
Homologs : HomoloGeneGP9
Homology/Alignments : Family Browser (UCSC)GP9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGP9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GP9
dbVarGP9
ClinVarGP9
1000_GenomesGP9 
Exome Variant ServerGP9
ExAC (Exome Aggregation Consortium)GP9 (select the gene name)
Genetic variants : HAPMAP2815
Genomic Variants (DGV)GP9 [DGVbeta]
DECIPHERGP9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGP9 
Mutations
ICGC Data PortalGP9 
TCGA Data PortalGP9 
Broad Tumor PortalGP9
OASIS PortalGP9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGP9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGP9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GP9
DgiDB (Drug Gene Interaction Database)GP9
DoCM (Curated mutations)GP9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GP9 (select a term)
intoGenGP9
Cancer3DGP9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM173515    231200   
Orphanet796   
MedgenGP9
Genetic Testing Registry GP9
NextProtP14770 [Medical]
TSGene2815
GENETestsGP9
Target ValidationGP9
Huge Navigator GP9 [HugePedia]
snp3D : Map Gene to Disease2815
BioCentury BCIQGP9
ClinGenGP9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2815
Chemical/Pharm GKB GenePA28825
Clinical trialGP9
Miscellaneous
canSAR (ICR)GP9 (select the gene name)
Probes
Litterature
PubMed65 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGP9
EVEXGP9
GoPubMedGP9
iHOPGP9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:51:03 CEST 2017

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