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GPALPP1 (GPALPP motifs containing 1)

Identity

Alias_namesKIAA1704
KIAA1704
Alias_symbol (synonym)bA245H20.2
AD029
LSR7
Other alias
HGNC (Hugo) GPALPP1
LocusID (NCBI) 55425
Atlas_Id 63920
Location 13q14.12  [Link to chromosome band 13q14]
Location_base_pair Starts at 44989530 and ends at 45030305 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GPALPP1 (13q14.12) / GTF2F2 (13q14.12)GPALPP1 (13q14.12) / PRKCQ (10p15.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GPALPP1   20298
Cards
Entrez_Gene (NCBI)GPALPP1  55425  GPALPP motifs containing 1
AliasesAD029; KIAA1704; LSR7; bA245H20.2
GeneCards (Weizmann)GPALPP1
Ensembl hg19 (Hinxton)ENSG00000133114 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000133114 [Gene_View]  chr13:44989530-45030305 [Contig_View]  GPALPP1 [Vega]
ICGC DataPortalENSG00000133114
TCGA cBioPortalGPALPP1
AceView (NCBI)GPALPP1
Genatlas (Paris)GPALPP1
WikiGenes55425
SOURCE (Princeton)GPALPP1
Genetics Home Reference (NIH)GPALPP1
Genomic and cartography
GoldenPath hg38 (UCSC)GPALPP1  -     chr13:44989530-45030305 +  13q14.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GPALPP1  -     13q14.12   [Description]    (hg19-Feb_2009)
EnsemblGPALPP1 - 13q14.12 [CytoView hg19]  GPALPP1 - 13q14.12 [CytoView hg38]
Mapping of homologs : NCBIGPALPP1 [Mapview hg19]  GPALPP1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB051491 AF145122 AF245045 AJ420573 AK292493
RefSeq transcript (Entrez)NM_001316951 NM_001316952 NM_018559
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GPALPP1
Cluster EST : UnigeneHs.744143 [ NCBI ]
CGAP (NCI)Hs.744143
Alternative Splicing GalleryENSG00000133114
Gene ExpressionGPALPP1 [ NCBI-GEO ]   GPALPP1 [ EBI - ARRAY_EXPRESS ]   GPALPP1 [ SEEK ]   GPALPP1 [ MEM ]
Gene Expression Viewer (FireBrowse)GPALPP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55425
GTEX Portal (Tissue expression)GPALPP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IXQ4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IXQ4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IXQ4
Splice isoforms : SwissVarQ8IXQ4
PhosPhoSitePlusQ8IXQ4
Domains : Interpro (EBI)DUF3752   
Domain families : Pfam (Sanger)DUF3752 (PF12572)   
Domain families : Pfam (NCBI)pfam12572   
Conserved Domain (NCBI)GPALPP1
DMDM Disease mutations55425
Blocks (Seattle)GPALPP1
SuperfamilyQ8IXQ4
Human Protein AtlasENSG00000133114
Peptide AtlasQ8IXQ4
HPRD17225
IPIIPI00645766   IPI00477669   IPI00847580   IPI00853527   IPI00911120   
Protein Interaction databases
DIP (DOE-UCLA)Q8IXQ4
IntAct (EBI)Q8IXQ4
FunCoupENSG00000133114
BioGRIDGPALPP1
STRING (EMBL)GPALPP1
ZODIACGPALPP1
Ontologies - Pathways
QuickGOQ8IXQ4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkGPALPP1
Atlas of Cancer Signalling NetworkGPALPP1
Wikipedia pathwaysGPALPP1
Orthology - Evolution
OrthoDB55425
GeneTree (enSembl)ENSG00000133114
Phylogenetic Trees/Animal Genes : TreeFamGPALPP1
HOVERGENQ8IXQ4
HOGENOMQ8IXQ4
Homologs : HomoloGeneGPALPP1
Homology/Alignments : Family Browser (UCSC)GPALPP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGPALPP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPALPP1
dbVarGPALPP1
ClinVarGPALPP1
1000_GenomesGPALPP1 
Exome Variant ServerGPALPP1
ExAC (Exome Aggregation Consortium)GPALPP1 (select the gene name)
Genetic variants : HAPMAP55425
Genomic Variants (DGV)GPALPP1 [DGVbeta]
DECIPHERGPALPP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGPALPP1 
Mutations
ICGC Data PortalGPALPP1 
TCGA Data PortalGPALPP1 
Broad Tumor PortalGPALPP1
OASIS PortalGPALPP1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGPALPP1
BioMutasearch GPALPP1
DgiDB (Drug Gene Interaction Database)GPALPP1
DoCM (Curated mutations)GPALPP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GPALPP1 (select a term)
intoGenGPALPP1
Cancer3DGPALPP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGPALPP1
Genetic Testing Registry GPALPP1
NextProtQ8IXQ4 [Medical]
TSGene55425
GENETestsGPALPP1
Target ValidationGPALPP1
Huge Navigator GPALPP1 [HugePedia]
snp3D : Map Gene to Disease55425
BioCentury BCIQGPALPP1
ClinGenGPALPP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55425
Chemical/Pharm GKB GenePA134943194
Clinical trialGPALPP1
Miscellaneous
canSAR (ICR)GPALPP1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPALPP1
EVEXGPALPP1
GoPubMedGPALPP1
iHOPGPALPP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:51:04 CEST 2017

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