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GPANK1 (G-patch domain and ankyrin repeats 1)

Identity

Alias_namesBAT4
HLA-B associated transcript 4
Alias_symbol (synonym)G5
D6S54E
GPATCH10
ANKRD59
Other alias
HGNC (Hugo) GPANK1
LocusID (NCBI) 7918
Atlas_Id 63921
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 31661229 and ends at 31666283 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RNMTL1 (17p13.3) / GPANK1 (6p21.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GPANK1   13920
Cards
Entrez_Gene (NCBI)GPANK1  7918  G-patch domain and ankyrin repeats 1
AliasesANKRD59; BAT4; D6S54E; G5; 
GPATCH10
GeneCards (Weizmann)GPANK1
Ensembl hg19 (Hinxton)ENSG00000204438 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204438 [Gene_View]  ENSG00000204438 [Sequence]  chr6:31661229-31666283 [Contig_View]  GPANK1 [Vega]
ICGC DataPortalENSG00000204438
TCGA cBioPortalGPANK1
AceView (NCBI)GPANK1
Genatlas (Paris)GPANK1
WikiGenes7918
SOURCE (Princeton)GPANK1
Genetics Home Reference (NIH)GPANK1
Genomic and cartography
GoldenPath hg38 (UCSC)GPANK1  -     chr6:31661229-31666283 -  6p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GPANK1  -     6p21.33   [Description]    (hg19-Feb_2009)
EnsemblGPANK1 - 6p21.33 [CytoView hg19]  GPANK1 - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBIGPANK1 [Mapview hg19]  GPANK1 [Mapview hg38]
OMIM142610   
Gene and transcription
Genbank (Entrez)AF087962 AJ420471 AK123707 AK314056 BC008783
RefSeq transcript (Entrez)NM_001199237 NM_001199238 NM_001199239 NM_001199240 NM_033177
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)GPANK1
Cluster EST : UnigeneHs.732291 [ NCBI ]
CGAP (NCI)Hs.732291
Alternative Splicing GalleryENSG00000204438
Gene ExpressionGPANK1 [ NCBI-GEO ]   GPANK1 [ EBI - ARRAY_EXPRESS ]   GPANK1 [ SEEK ]   GPANK1 [ MEM ]
Gene Expression Viewer (FireBrowse)GPANK1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7918
GTEX Portal (Tissue expression)GPANK1
Human Protein AtlasENSG00000204438-GPANK1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95872   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95872  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95872
Splice isoforms : SwissVarO95872
PhosPhoSitePlusO95872
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    G_PATCH (PS50174)   
Domains : Interpro (EBI)Ankyrin_rpt-contain_dom    G_patch_dom   
Domain families : Pfam (Sanger)G-patch (PF01585)   
Domain families : Pfam (NCBI)pfam01585   
Domain families : Smart (EMBL)G_patch (SM00443)  
Conserved Domain (NCBI)GPANK1
DMDM Disease mutations7918
Blocks (Seattle)GPANK1
SuperfamilyO95872
Human Protein Atlas [tissue]ENSG00000204438-GPANK1 [tissue]
Peptide AtlasO95872
HPRD00810
IPIIPI00013201   IPI00642528   IPI00791619   IPI00793497   IPI00792910   IPI00789843   IPI00789168   IPI00893567   IPI00853289   IPI00647941   IPI00853523   IPI00852783   IPI00853394   
Protein Interaction databases
DIP (DOE-UCLA)O95872
IntAct (EBI)O95872
FunCoupENSG00000204438
BioGRIDGPANK1
STRING (EMBL)GPANK1
ZODIACGPANK1
Ontologies - Pathways
QuickGOO95872
Ontology : AmiGOnucleic acid binding  protein binding  
Ontology : EGO-EBInucleic acid binding  protein binding  
NDEx NetworkGPANK1
Atlas of Cancer Signalling NetworkGPANK1
Wikipedia pathwaysGPANK1
Orthology - Evolution
OrthoDB7918
GeneTree (enSembl)ENSG00000204438
Phylogenetic Trees/Animal Genes : TreeFamGPANK1
HOVERGENO95872
HOGENOMO95872
Homologs : HomoloGeneGPANK1
Homology/Alignments : Family Browser (UCSC)GPANK1
Gene fusions - Rearrangements
Fusion : QuiverGPANK1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGPANK1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPANK1
dbVarGPANK1
ClinVarGPANK1
1000_GenomesGPANK1 
Exome Variant ServerGPANK1
ExAC (Exome Aggregation Consortium)ENSG00000204438
GNOMAD BrowserENSG00000204438
Varsome BrowserGPANK1
Genetic variants : HAPMAP7918
Genomic Variants (DGV)GPANK1 [DGVbeta]
DECIPHERGPANK1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGPANK1 
Mutations
ICGC Data PortalGPANK1 
TCGA Data PortalGPANK1 
Broad Tumor PortalGPANK1
OASIS PortalGPANK1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGPANK1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGPANK1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GPANK1
DgiDB (Drug Gene Interaction Database)GPANK1
DoCM (Curated mutations)GPANK1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GPANK1 (select a term)
intoGenGPANK1
Cancer3DGPANK1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM142610   
Orphanet
DisGeNETGPANK1
MedgenGPANK1
Genetic Testing Registry GPANK1
NextProtO95872 [Medical]
TSGene7918
GENETestsGPANK1
Target ValidationGPANK1
Huge Navigator GPANK1 [HugePedia]
snp3D : Map Gene to Disease7918
BioCentury BCIQGPANK1
ClinGenGPANK1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7918
Chemical/Pharm GKB GenePA25265
Clinical trialGPANK1
Miscellaneous
canSAR (ICR)GPANK1 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPANK1
EVEXGPANK1
GoPubMedGPANK1
iHOPGPANK1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:47:42 CEST 2018

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