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GPAT2 (glycerol-3-phosphate acyltransferase 2, mitochondrial)

Identity

Alias_symbol (synonym)CT123
Other alias
HGNC (Hugo) GPAT2
LocusID (NCBI) 150763
Atlas_Id 55090
Location 2q11.2  [Link to chromosome band 2q11]
Location_base_pair Starts at 96021946 and ends at 96035245 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GPAT2   27168
Cards
Entrez_Gene (NCBI)GPAT2  150763  glycerol-3-phosphate acyltransferase 2, mitochondrial
AliasesCT123
GeneCards (Weizmann)GPAT2
Ensembl hg19 (Hinxton)ENSG00000186281 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186281 [Gene_View]  chr2:96021946-96035245 [Contig_View]  GPAT2 [Vega]
ICGC DataPortalENSG00000186281
TCGA cBioPortalGPAT2
AceView (NCBI)GPAT2
Genatlas (Paris)GPAT2
WikiGenes150763
SOURCE (Princeton)GPAT2
Genetics Home Reference (NIH)GPAT2
Genomic and cartography
GoldenPath hg38 (UCSC)GPAT2  -     chr2:96021946-96035245 -  2q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GPAT2  -     2q11.2   [Description]    (hg19-Feb_2009)
EnsemblGPAT2 - 2q11.2 [CytoView hg19]  GPAT2 - 2q11.2 [CytoView hg38]
Mapping of homologs : NCBIGPAT2 [Mapview hg19]  GPAT2 [Mapview hg38]
OMIM616431   
Gene and transcription
Genbank (Entrez)AK122580 AK122734 AK131194 AK131197 AK298131
RefSeq transcript (Entrez)NM_001321525 NM_001321526 NM_001321527 NM_001321528 NM_001321529 NM_001321530 NM_001321531 NM_207328
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GPAT2
Cluster EST : UnigeneHs.679801 [ NCBI ]
CGAP (NCI)Hs.679801
Alternative Splicing GalleryENSG00000186281
Gene ExpressionGPAT2 [ NCBI-GEO ]   GPAT2 [ EBI - ARRAY_EXPRESS ]   GPAT2 [ SEEK ]   GPAT2 [ MEM ]
Gene Expression Viewer (FireBrowse)GPAT2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)150763
GTEX Portal (Tissue expression)GPAT2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NUI2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NUI2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NUI2
Splice isoforms : SwissVarQ6NUI2
PhosPhoSitePlusQ6NUI2
Domains : Interpro (EBI)GPAT/DHAPAT    Plipid/glycerol_acylTrfase   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)PlsC (SM00563)  
Conserved Domain (NCBI)GPAT2
DMDM Disease mutations150763
Blocks (Seattle)GPAT2
SuperfamilyQ6NUI2
Human Protein AtlasENSG00000186281
Peptide AtlasQ6NUI2
HPRD14089
IPIIPI00419675   IPI00442339   IPI00888543   IPI01017911   IPI00477691   IPI00329462   IPI00744938   
Protein Interaction databases
DIP (DOE-UCLA)Q6NUI2
IntAct (EBI)Q6NUI2
FunCoupENSG00000186281
BioGRIDGPAT2
STRING (EMBL)GPAT2
ZODIACGPAT2
Ontologies - Pathways
QuickGOQ6NUI2
Ontology : AmiGOglycerol-3-phosphate O-acyltransferase activity  glycerol-3-phosphate O-acyltransferase activity  mitochondrion  mitochondrion  mitochondrial outer membrane  glycerol-3-phosphate metabolic process  phosphatidic acid biosynthetic process  integral component of membrane  CDP-diacylglycerol biosynthetic process  triglyceride biosynthetic process  piRNA biosynthetic process  
Ontology : EGO-EBIglycerol-3-phosphate O-acyltransferase activity  glycerol-3-phosphate O-acyltransferase activity  mitochondrion  mitochondrion  mitochondrial outer membrane  glycerol-3-phosphate metabolic process  phosphatidic acid biosynthetic process  integral component of membrane  CDP-diacylglycerol biosynthetic process  triglyceride biosynthetic process  piRNA biosynthetic process  
Pathways : KEGGGlycerolipid metabolism    Glycerophospholipid metabolism   
NDEx NetworkGPAT2
Atlas of Cancer Signalling NetworkGPAT2
Wikipedia pathwaysGPAT2
Orthology - Evolution
OrthoDB150763
GeneTree (enSembl)ENSG00000186281
Phylogenetic Trees/Animal Genes : TreeFamGPAT2
HOVERGENQ6NUI2
HOGENOMQ6NUI2
Homologs : HomoloGeneGPAT2
Homology/Alignments : Family Browser (UCSC)GPAT2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGPAT2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPAT2
dbVarGPAT2
ClinVarGPAT2
1000_GenomesGPAT2 
Exome Variant ServerGPAT2
ExAC (Exome Aggregation Consortium)GPAT2 (select the gene name)
Genetic variants : HAPMAP150763
Genomic Variants (DGV)GPAT2 [DGVbeta]
DECIPHERGPAT2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGPAT2 
Mutations
ICGC Data PortalGPAT2 
TCGA Data PortalGPAT2 
Broad Tumor PortalGPAT2
OASIS PortalGPAT2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGPAT2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGPAT2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GPAT2
DgiDB (Drug Gene Interaction Database)GPAT2
DoCM (Curated mutations)GPAT2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GPAT2 (select a term)
intoGenGPAT2
Cancer3DGPAT2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616431   
Orphanet
MedgenGPAT2
Genetic Testing Registry GPAT2
NextProtQ6NUI2 [Medical]
TSGene150763
GENETestsGPAT2
Target ValidationGPAT2
Huge Navigator GPAT2 [HugePedia]
snp3D : Map Gene to Disease150763
BioCentury BCIQGPAT2
ClinGenGPAT2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD150763
Chemical/Pharm GKB GenePA165696677
Clinical trialGPAT2
Miscellaneous
canSAR (ICR)GPAT2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPAT2
EVEXGPAT2
GoPubMedGPAT2
iHOPGPAT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:35:44 CEST 2017

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