Atlas of Genetics and Cytogenetics in Oncology and Haematology

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GPAT3 (glycerol-3-phosphate acyltransferase 3)

Identity

Alias (NCBI)AGPAT 10
AGPAT10
AGPAT8
AGPAT9
HMFN0839
LPAAT-theta
MAG1
HGNC (Hugo) GPAT3
HGNC Alias symbMGC11324
LPAAT-theta
MAG1
HMFN0839
AGPAT10
HGNC Alias namelysophosphatidic acid acyltransferase, theta
HGNC Previous nameAGPAT9
HGNC Previous name1-acylglycerol-3-phosphate O-acyltransferase 9 (lysophosphatidic acid acyltransferase, theta)
 1-acylglycerol-3-phosphate O-acyltransferase 9
LocusID (NCBI) 84803
Atlas_Id 55364
Location 4q21.23  [Link to chromosome band 4q21]
Location_base_pair Starts at 83536108 and ends at 83605874 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GPAT3 (4q21.23) / GPAT3 (4q21.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GPAT3   28157
Cards
Entrez_Gene (NCBI)GPAT3  84803  glycerol-3-phosphate acyltransferase 3
AliasesAGPAT; AGPAT10; AGPAT8; AGPAT9; 
HMFN0839; LPAAT-theta; MAG1
GeneCards (Weizmann)GPAT3
Ensembl hg19 (Hinxton)ENSG00000138678 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000138678 [Gene_View]  ENSG00000138678 [Sequence]  chr4:83536108-83605874 [Contig_View]  GPAT3 [Vega]
ICGC DataPortalENSG00000138678
TCGA cBioPortalGPAT3
AceView (NCBI)GPAT3
Genatlas (Paris)GPAT3
WikiGenes84803
SOURCE (Princeton)GPAT3
Genetics Home Reference (NIH)GPAT3
Genomic and cartography
GoldenPath hg38 (UCSC)GPAT3  -     chr4:83536108-83605874 +  4q21.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GPAT3  -     4q21.23   [Description]    (hg19-Feb_2009)
GoldenPathGPAT3 - 4q21.23 [CytoView hg19]  GPAT3 - 4q21.23 [CytoView hg38]
ImmunoBaseENSG00000138678
genome Data Viewer NCBIGPAT3 [Mapview hg19]  
OMIM610958   
Gene and transcription
Genbank (Entrez)AB075872 AK055749 AK223543 AY358100 BC006236
RefSeq transcript (Entrez)NM_001256421 NM_001256422 NM_032717
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GPAT3
Alternative Splicing GalleryENSG00000138678
Gene ExpressionGPAT3 [ NCBI-GEO ]   GPAT3 [ EBI - ARRAY_EXPRESS ]   GPAT3 [ SEEK ]   GPAT3 [ MEM ]
Gene Expression Viewer (FireBrowse)GPAT3 [ Firebrowse - Broad ]
GenevisibleExpression of GPAT3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84803
GTEX Portal (Tissue expression)GPAT3
Human Protein AtlasENSG00000138678-GPAT3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ53EU6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ53EU6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ53EU6
Splice isoforms : SwissVarQ53EU6
PhosPhoSitePlusQ53EU6
Domains : Interpro (EBI)Plipid/glycerol_acylTrfase   
Domain families : Pfam (Sanger)Acyltransferase (PF01553)   
Domain families : Pfam (NCBI)pfam01553   
Domain families : Smart (EMBL)PlsC (SM00563)  
Conserved Domain (NCBI)GPAT3
DMDM Disease mutations84803
Blocks (Seattle)GPAT3
SuperfamilyQ53EU6
Human Protein Atlas [tissue]ENSG00000138678-GPAT3 [tissue]
Peptide AtlasQ53EU6
HPRD14417
IPIIPI00140301   
Protein Interaction databases
DIP (DOE-UCLA)Q53EU6
IntAct (EBI)Q53EU6
FunCoupENSG00000138678
BioGRIDGPAT3
STRING (EMBL)GPAT3
ZODIACGPAT3
Ontologies - Pathways
QuickGOQ53EU6
Ontology : AmiGO1-acylglycerol-3-phosphate O-acyltransferase activity  glycerol-3-phosphate O-acyltransferase activity  glycerol-3-phosphate O-acyltransferase activity  endoplasmic reticulum  endoplasmic reticulum membrane  endoplasmic reticulum membrane  phosphatidic acid biosynthetic process  integral component of membrane  CDP-diacylglycerol biosynthetic process  triglyceride biosynthetic process  triglyceride biosynthetic process  regulation of TOR signaling  sn-1-glycerol-3-phosphate C16:0-DCA-CoA acyl transferase activity  
Ontology : EGO-EBI1-acylglycerol-3-phosphate O-acyltransferase activity  glycerol-3-phosphate O-acyltransferase activity  glycerol-3-phosphate O-acyltransferase activity  endoplasmic reticulum  endoplasmic reticulum membrane  endoplasmic reticulum membrane  phosphatidic acid biosynthetic process  integral component of membrane  CDP-diacylglycerol biosynthetic process  triglyceride biosynthetic process  triglyceride biosynthetic process  regulation of TOR signaling  sn-1-glycerol-3-phosphate C16:0-DCA-CoA acyl transferase activity  
NDEx NetworkGPAT3
Atlas of Cancer Signalling NetworkGPAT3
Wikipedia pathwaysGPAT3
Orthology - Evolution
OrthoDB84803
GeneTree (enSembl)ENSG00000138678
Phylogenetic Trees/Animal Genes : TreeFamGPAT3
HOGENOMQ53EU6
Homologs : HomoloGeneGPAT3
Homology/Alignments : Family Browser (UCSC)GPAT3
Gene fusions - Rearrangements
Fusion : QuiverGPAT3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGPAT3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPAT3
dbVarGPAT3
ClinVarGPAT3
MonarchGPAT3
1000_GenomesGPAT3 
Exome Variant ServerGPAT3
GNOMAD BrowserENSG00000138678
Varsome BrowserGPAT3
Genetic variants : HAPMAP84803
Genomic Variants (DGV)GPAT3 [DGVbeta]
DECIPHERGPAT3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGPAT3 
Mutations
ICGC Data PortalGPAT3 
TCGA Data PortalGPAT3 
Broad Tumor PortalGPAT3
OASIS PortalGPAT3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGPAT3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DGPAT3
Mutations and Diseases : HGMDGPAT3
BioMutasearch GPAT3
DgiDB (Drug Gene Interaction Database)GPAT3
DoCM (Curated mutations)GPAT3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GPAT3 (select a term)
intoGenGPAT3
Cancer3DGPAT3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610958   
Orphanet
DisGeNETGPAT3
MedgenGPAT3
Genetic Testing Registry GPAT3
NextProtQ53EU6 [Medical]
TSGene84803
GENETestsGPAT3
Target ValidationGPAT3
Huge Navigator GPAT3 [HugePedia]
snp3D : Map Gene to Disease84803
BioCentury BCIQGPAT3
ClinGenGPAT3
Clinical trials, drugs, therapy
Protein Interactions : CTD84803
Pharm GKB GenePA162375888
Clinical trialGPAT3
Miscellaneous
canSAR (ICR)GPAT3 (select the gene name)
HarmonizomeGPAT3
DataMed IndexGPAT3
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPAT3
EVEXGPAT3
GoPubMedGPAT3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 14 14:13:09 CEST 2020
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