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GPATCH1 (G-patch domain containing 1)

Identity

Alias_namesGPATC1
Alias_symbol (synonym)ECGP
FLJ10206
FLJ38686
Other alias
HGNC (Hugo) GPATCH1
LocusID (NCBI) 55094
Atlas_Id 63923
Location 19q13.11  [Link to chromosome band 19q13]
Location_base_pair Starts at 33080880 and ends at 33130412 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GPATCH1 (19q13.11) / TFPI (2q32.1)PSPH (7p11.2) / GPATCH1 (19q13.11)SPOP (17q21.33) / GPATCH1 (19q13.11)
SPTBN1 (2p16.2) / GPATCH1 (19q13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GPATCH1   24658
Cards
Entrez_Gene (NCBI)GPATCH1  55094  G-patch domain containing 1
AliasesECGP; GPATC1
GeneCards (Weizmann)GPATCH1
Ensembl hg19 (Hinxton)ENSG00000076650 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000076650 [Gene_View]  chr19:33080880-33130412 [Contig_View]  GPATCH1 [Vega]
ICGC DataPortalENSG00000076650
TCGA cBioPortalGPATCH1
AceView (NCBI)GPATCH1
Genatlas (Paris)GPATCH1
WikiGenes55094
SOURCE (Princeton)GPATCH1
Genetics Home Reference (NIH)GPATCH1
Genomic and cartography
GoldenPath hg38 (UCSC)GPATCH1  -     chr19:33080880-33130412 +  19q13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GPATCH1  -     19q13.11   [Description]    (hg19-Feb_2009)
EnsemblGPATCH1 - 19q13.11 [CytoView hg19]  GPATCH1 - 19q13.11 [CytoView hg38]
Mapping of homologs : NCBIGPATCH1 [Mapview hg19]  GPATCH1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF434677 AK001068 AK091835 AK096005 AK292503
RefSeq transcript (Entrez)NM_018025
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GPATCH1
Cluster EST : UnigeneHs.466436 [ NCBI ]
CGAP (NCI)Hs.466436
Alternative Splicing GalleryENSG00000076650
Gene ExpressionGPATCH1 [ NCBI-GEO ]   GPATCH1 [ EBI - ARRAY_EXPRESS ]   GPATCH1 [ SEEK ]   GPATCH1 [ MEM ]
Gene Expression Viewer (FireBrowse)GPATCH1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55094
GTEX Portal (Tissue expression)GPATCH1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BRR8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BRR8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BRR8
Splice isoforms : SwissVarQ9BRR8
PhosPhoSitePlusQ9BRR8
Domaine pattern : Prosite (Expaxy)G_PATCH (PS50174)   
Domains : Interpro (EBI)DUF1604    G_patch_dom   
Domain families : Pfam (Sanger)DUF1604 (PF07713)    G-patch (PF01585)   
Domain families : Pfam (NCBI)pfam07713    pfam01585   
Conserved Domain (NCBI)GPATCH1
DMDM Disease mutations55094
Blocks (Seattle)GPATCH1
SuperfamilyQ9BRR8
Human Protein AtlasENSG00000076650
Peptide AtlasQ9BRR8
HPRD11008
IPIIPI00550477   
Protein Interaction databases
DIP (DOE-UCLA)Q9BRR8
IntAct (EBI)Q9BRR8
FunCoupENSG00000076650
BioGRIDGPATCH1
STRING (EMBL)GPATCH1
ZODIACGPATCH1
Ontologies - Pathways
QuickGOQ9BRR8
Ontology : AmiGOmRNA splicing, via spliceosome  nucleic acid binding  catalytic step 2 spliceosome  
Ontology : EGO-EBImRNA splicing, via spliceosome  nucleic acid binding  catalytic step 2 spliceosome  
NDEx NetworkGPATCH1
Atlas of Cancer Signalling NetworkGPATCH1
Wikipedia pathwaysGPATCH1
Orthology - Evolution
OrthoDB55094
GeneTree (enSembl)ENSG00000076650
Phylogenetic Trees/Animal Genes : TreeFamGPATCH1
HOVERGENQ9BRR8
HOGENOMQ9BRR8
Homologs : HomoloGeneGPATCH1
Homology/Alignments : Family Browser (UCSC)GPATCH1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGPATCH1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPATCH1
dbVarGPATCH1
ClinVarGPATCH1
1000_GenomesGPATCH1 
Exome Variant ServerGPATCH1
ExAC (Exome Aggregation Consortium)GPATCH1 (select the gene name)
Genetic variants : HAPMAP55094
Genomic Variants (DGV)GPATCH1 [DGVbeta]
DECIPHERGPATCH1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGPATCH1 
Mutations
ICGC Data PortalGPATCH1 
TCGA Data PortalGPATCH1 
Broad Tumor PortalGPATCH1
OASIS PortalGPATCH1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGPATCH1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGPATCH1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GPATCH1
DgiDB (Drug Gene Interaction Database)GPATCH1
DoCM (Curated mutations)GPATCH1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GPATCH1 (select a term)
intoGenGPATCH1
Cancer3DGPATCH1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGPATCH1
Genetic Testing Registry GPATCH1
NextProtQ9BRR8 [Medical]
TSGene55094
GENETestsGPATCH1
Target ValidationGPATCH1
Huge Navigator GPATCH1 [HugePedia]
snp3D : Map Gene to Disease55094
BioCentury BCIQGPATCH1
ClinGenGPATCH1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55094
Chemical/Pharm GKB GenePA162390063
Clinical trialGPATCH1
Miscellaneous
canSAR (ICR)GPATCH1 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPATCH1
EVEXGPATCH1
GoPubMedGPATCH1
iHOPGPATCH1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:09:40 CEST 2017

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