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GPATCH11 (G patch domain containing 11)

Identity

Alias_namesCCDC75
coiled-coil domain containing 75
Alias_symbol (synonym)FLJ38348
CENPY
CENP-Y
Other alias
HGNC (Hugo) GPATCH11
LocusID (NCBI) 253635
Atlas_Id 63924
Location 2p22.2  [Link to chromosome band 2p22]
Location_base_pair Starts at 37311594 and ends at 37326387 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GPATCH11   26768
Cards
Entrez_Gene (NCBI)GPATCH11  253635  G patch domain containing 11
AliasesCCDC75; CENP-Y; CENPY
GeneCards (Weizmann)GPATCH11
Ensembl hg19 (Hinxton)ENSG00000152133 [Gene_View]  chr2:37311594-37326387 [Contig_View]  GPATCH11 [Vega]
Ensembl hg38 (Hinxton)ENSG00000152133 [Gene_View]  chr2:37311594-37326387 [Contig_View]  GPATCH11 [Vega]
ICGC DataPortalENSG00000152133
TCGA cBioPortalGPATCH11
AceView (NCBI)GPATCH11
Genatlas (Paris)GPATCH11
WikiGenes253635
SOURCE (Princeton)GPATCH11
Genetics Home Reference (NIH)GPATCH11
Genomic and cartography
GoldenPath hg19 (UCSC)GPATCH11  -     chr2:37311594-37326387 +  2p22.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GPATCH11  -     2p22.2   [Description]    (hg38-Dec_2013)
EnsemblGPATCH11 - 2p22.2 [CytoView hg19]  GPATCH11 - 2p22.2 [CytoView hg38]
Mapping of homologs : NCBIGPATCH11 [Mapview hg19]  GPATCH11 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK095667 AK289504 AK294697 BC071798 BE876720
RefSeq transcript (Entrez)NM_001278505 NM_174931
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_022184 NW_004929300
Consensus coding sequences : CCDS (NCBI)GPATCH11
Cluster EST : UnigeneHs.595250 [ NCBI ]
CGAP (NCI)Hs.595250
Alternative Splicing GalleryENSG00000152133
Gene ExpressionGPATCH11 [ NCBI-GEO ]   GPATCH11 [ EBI - ARRAY_EXPRESS ]   GPATCH11 [ SEEK ]   GPATCH11 [ MEM ]
Gene Expression Viewer (FireBrowse)GPATCH11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)253635
GTEX Portal (Tissue expression)GPATCH11
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N954   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N954  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N954
Splice isoforms : SwissVarQ8N954
PhosPhoSitePlusQ8N954
Domaine pattern : Prosite (Expaxy)G_PATCH (PS50174)   
Domains : Interpro (EBI)DUF4187    G_patch_dom   
Domain families : Pfam (Sanger)DUF4187 (PF13821)    G-patch (PF01585)   
Domain families : Pfam (NCBI)pfam13821    pfam01585   
Domain families : Smart (EMBL)G_patch (SM00443)  
Conserved Domain (NCBI)GPATCH11
DMDM Disease mutations253635
Blocks (Seattle)GPATCH11
SuperfamilyQ8N954
Human Protein AtlasENSG00000152133
Peptide AtlasQ8N954
HPRD08785
IPIIPI00657642   IPI00185065   
Protein Interaction databases
DIP (DOE-UCLA)Q8N954
IntAct (EBI)Q8N954
FunCoupENSG00000152133
BioGRIDGPATCH11
STRING (EMBL)GPATCH11
ZODIACGPATCH11
Ontologies - Pathways
QuickGOQ8N954
Ontology : AmiGOnucleic acid binding  protein binding  
Ontology : EGO-EBInucleic acid binding  protein binding  
NDEx NetworkGPATCH11
Atlas of Cancer Signalling NetworkGPATCH11
Wikipedia pathwaysGPATCH11
Orthology - Evolution
OrthoDB253635
GeneTree (enSembl)ENSG00000152133
Phylogenetic Trees/Animal Genes : TreeFamGPATCH11
HOVERGENQ8N954
HOGENOMQ8N954
Homologs : HomoloGeneGPATCH11
Homology/Alignments : Family Browser (UCSC)GPATCH11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGPATCH11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPATCH11
dbVarGPATCH11
ClinVarGPATCH11
1000_GenomesGPATCH11 
Exome Variant ServerGPATCH11
ExAC (Exome Aggregation Consortium)GPATCH11 (select the gene name)
Genetic variants : HAPMAP253635
Genomic Variants (DGV)GPATCH11 [DGVbeta]
DECIPHER (Syndromes)2:37311594-37326387  ENSG00000152133
CONAN: Copy Number AnalysisGPATCH11 
Mutations
ICGC Data PortalGPATCH11 
TCGA Data PortalGPATCH11 
Broad Tumor PortalGPATCH11
OASIS PortalGPATCH11 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGPATCH11
BioMutasearch GPATCH11
DgiDB (Drug Gene Interaction Database)GPATCH11
DoCM (Curated mutations)GPATCH11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GPATCH11 (select a term)
intoGenGPATCH11
Cancer3DGPATCH11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGPATCH11
Genetic Testing Registry GPATCH11
NextProtQ8N954 [Medical]
TSGene253635
GENETestsGPATCH11
Huge Navigator GPATCH11 [HugePedia]
snp3D : Map Gene to Disease253635
BioCentury BCIQGPATCH11
ClinGenGPATCH11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD253635
Chemical/Pharm GKB GenePA143485427
Clinical trialGPATCH11
Miscellaneous
canSAR (ICR)GPATCH11 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPATCH11
EVEXGPATCH11
GoPubMedGPATCH11
iHOPGPATCH11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:06:33 CET 2017

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