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GPATCH2 (G-patch domain containing 2)

Identity

Alias_namesGPATC2
Alias_symbol (synonym)FLJ10252
CT110
PPP1R30
Other alias
HGNC (Hugo) GPATCH2
LocusID (NCBI) 55105
Atlas_Id 51055
Location 1q41  [Link to chromosome band 1q41]
Location_base_pair Starts at 217608184 and ends at 217631112 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GPATCH2 (1q41) / GPATCH2 (1q41)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GPATCH2   25499
Cards
Entrez_Gene (NCBI)GPATCH2  55105  G-patch domain containing 2
AliasesCT110; GPATC2; PPP1R30
GeneCards (Weizmann)GPATCH2
Ensembl hg19 (Hinxton)ENSG00000092978 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000092978 [Gene_View]  chr1:217608184-217631112 [Contig_View]  GPATCH2 [Vega]
ICGC DataPortalENSG00000092978
TCGA cBioPortalGPATCH2
AceView (NCBI)GPATCH2
Genatlas (Paris)GPATCH2
WikiGenes55105
SOURCE (Princeton)GPATCH2
Genetics Home Reference (NIH)GPATCH2
Genomic and cartography
GoldenPath hg38 (UCSC)GPATCH2  -     chr1:217608184-217631112 -  1q41   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GPATCH2  -     1q41   [Description]    (hg19-Feb_2009)
EnsemblGPATCH2 - 1q41 [CytoView hg19]  GPATCH2 - 1q41 [CytoView hg38]
Mapping of homologs : NCBIGPATCH2 [Mapview hg19]  GPATCH2 [Mapview hg38]
OMIM616836   
Gene and transcription
Genbank (Entrez)AK001114 AK024701 AK123745 AK291238 AK310304
RefSeq transcript (Entrez)NM_001297754 NM_018040
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GPATCH2
Cluster EST : UnigeneHs.420757 [ NCBI ]
CGAP (NCI)Hs.420757
Alternative Splicing GalleryENSG00000092978
Gene ExpressionGPATCH2 [ NCBI-GEO ]   GPATCH2 [ EBI - ARRAY_EXPRESS ]   GPATCH2 [ SEEK ]   GPATCH2 [ MEM ]
Gene Expression Viewer (FireBrowse)GPATCH2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55105
GTEX Portal (Tissue expression)GPATCH2
Human Protein AtlasENSG00000092978-GPATCH2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NW75   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NW75  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NW75
Splice isoforms : SwissVarQ9NW75
PhosPhoSitePlusQ9NW75
Domaine pattern : Prosite (Expaxy)G_PATCH (PS50174)   
Domains : Interpro (EBI)G_patch_dom    Gpatch2   
Domain families : Pfam (Sanger)G-patch (PF01585)   
Domain families : Pfam (NCBI)pfam01585   
Domain families : Smart (EMBL)G_patch (SM00443)  
Conserved Domain (NCBI)GPATCH2
DMDM Disease mutations55105
Blocks (Seattle)GPATCH2
SuperfamilyQ9NW75
Human Protein Atlas [tissue]ENSG00000092978-GPATCH2 [tissue]
Peptide AtlasQ9NW75
HPRD07657
IPIIPI00018019   IPI00414242   
Protein Interaction databases
DIP (DOE-UCLA)Q9NW75
IntAct (EBI)Q9NW75
FunCoupENSG00000092978
BioGRIDGPATCH2
STRING (EMBL)GPATCH2
ZODIACGPATCH2
Ontologies - Pathways
QuickGOQ9NW75
Ontology : AmiGOnucleic acid binding  nucleolus  negative regulation of phosphatase activity  nuclear speck  
Ontology : EGO-EBInucleic acid binding  nucleolus  negative regulation of phosphatase activity  nuclear speck  
NDEx NetworkGPATCH2
Atlas of Cancer Signalling NetworkGPATCH2
Wikipedia pathwaysGPATCH2
Orthology - Evolution
OrthoDB55105
GeneTree (enSembl)ENSG00000092978
Phylogenetic Trees/Animal Genes : TreeFamGPATCH2
HOVERGENQ9NW75
HOGENOMQ9NW75
Homologs : HomoloGeneGPATCH2
Homology/Alignments : Family Browser (UCSC)GPATCH2
Gene fusions - Rearrangements
Tumor Fusion PortalGPATCH2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGPATCH2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPATCH2
dbVarGPATCH2
ClinVarGPATCH2
1000_GenomesGPATCH2 
Exome Variant ServerGPATCH2
ExAC (Exome Aggregation Consortium)ENSG00000092978
GNOMAD BrowserENSG00000092978
Genetic variants : HAPMAP55105
Genomic Variants (DGV)GPATCH2 [DGVbeta]
DECIPHERGPATCH2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGPATCH2 
Mutations
ICGC Data PortalGPATCH2 
TCGA Data PortalGPATCH2 
Broad Tumor PortalGPATCH2
OASIS PortalGPATCH2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGPATCH2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGPATCH2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GPATCH2
DgiDB (Drug Gene Interaction Database)GPATCH2
DoCM (Curated mutations)GPATCH2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GPATCH2 (select a term)
intoGenGPATCH2
Cancer3DGPATCH2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616836   
Orphanet
DisGeNETGPATCH2
MedgenGPATCH2
Genetic Testing Registry GPATCH2
NextProtQ9NW75 [Medical]
TSGene55105
GENETestsGPATCH2
Target ValidationGPATCH2
Huge Navigator GPATCH2 [HugePedia]
snp3D : Map Gene to Disease55105
BioCentury BCIQGPATCH2
ClinGenGPATCH2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55105
Chemical/Pharm GKB GenePA162390064
Clinical trialGPATCH2
Miscellaneous
canSAR (ICR)GPATCH2 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPATCH2
EVEXGPATCH2
GoPubMedGPATCH2
iHOPGPATCH2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:15:04 CET 2017

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