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GPATCH2L (G patch domain containing 2-like)

Identity

Alias_namesC14orf118
chromosome 14 open reading frame 118
Alias_symbol (synonym)FLJ20689
FLJ10033
Other alias
HGNC (Hugo) GPATCH2L
LocusID (NCBI) 55668
Atlas_Id 63925
Location 14q24.3  [Link to chromosome band 14q24]
Location_base_pair Starts at 76618228 and ends at 76679146 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GPATCH2L   20210
Cards
Entrez_Gene (NCBI)GPATCH2L  55668  G patch domain containing 2-like
AliasesC14orf118
GeneCards (Weizmann)GPATCH2L
Ensembl hg19 (Hinxton)ENSG00000089916 [Gene_View]  chr14:76618228-76679146 [Contig_View]  GPATCH2L [Vega]
Ensembl hg38 (Hinxton)ENSG00000089916 [Gene_View]  chr14:76618228-76679146 [Contig_View]  GPATCH2L [Vega]
ICGC DataPortalENSG00000089916
TCGA cBioPortalGPATCH2L
AceView (NCBI)GPATCH2L
Genatlas (Paris)GPATCH2L
WikiGenes55668
SOURCE (Princeton)GPATCH2L
Genetics Home Reference (NIH)GPATCH2L
Genomic and cartography
GoldenPath hg19 (UCSC)GPATCH2L  -     chr14:76618228-76679146 +  14q24.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GPATCH2L  -     14q24.3   [Description]    (hg38-Dec_2013)
EnsemblGPATCH2L - 14q24.3 [CytoView hg19]  GPATCH2L - 14q24.3 [CytoView hg38]
Mapping of homologs : NCBIGPATCH2L [Mapview hg19]  GPATCH2L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB032978 AK000696 AK000895 AK023523 AK025117
RefSeq transcript (Entrez)NM_017926 NM_017972
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)GPATCH2L
Cluster EST : UnigeneHs.733136 [ NCBI ]
CGAP (NCI)Hs.733136
Alternative Splicing GalleryENSG00000089916
Gene ExpressionGPATCH2L [ NCBI-GEO ]   GPATCH2L [ EBI - ARRAY_EXPRESS ]   GPATCH2L [ SEEK ]   GPATCH2L [ MEM ]
Gene Expression Viewer (FireBrowse)GPATCH2L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55668
GTEX Portal (Tissue expression)GPATCH2L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NWQ4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NWQ4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NWQ4
Splice isoforms : SwissVarQ9NWQ4
PhosPhoSitePlusQ9NWQ4
Domains : Interpro (EBI)Gpatch2   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GPATCH2L
DMDM Disease mutations55668
Blocks (Seattle)GPATCH2L
SuperfamilyQ9NWQ4
Human Protein AtlasENSG00000089916
Peptide AtlasQ9NWQ4
HPRD16594
IPIIPI00016731   IPI00619912   IPI00855988   IPI01025314   IPI01025204   IPI01025556   IPI01025881   IPI01025751   IPI01026076   IPI00970804   
Protein Interaction databases
DIP (DOE-UCLA)Q9NWQ4
IntAct (EBI)Q9NWQ4
FunCoupENSG00000089916
BioGRIDGPATCH2L
STRING (EMBL)GPATCH2L
ZODIACGPATCH2L
Ontologies - Pathways
QuickGOQ9NWQ4
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkGPATCH2L
Atlas of Cancer Signalling NetworkGPATCH2L
Wikipedia pathwaysGPATCH2L
Orthology - Evolution
OrthoDB55668
GeneTree (enSembl)ENSG00000089916
Phylogenetic Trees/Animal Genes : TreeFamGPATCH2L
HOVERGENQ9NWQ4
HOGENOMQ9NWQ4
Homologs : HomoloGeneGPATCH2L
Homology/Alignments : Family Browser (UCSC)GPATCH2L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGPATCH2L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPATCH2L
dbVarGPATCH2L
ClinVarGPATCH2L
1000_GenomesGPATCH2L 
Exome Variant ServerGPATCH2L
ExAC (Exome Aggregation Consortium)GPATCH2L (select the gene name)
Genetic variants : HAPMAP55668
Genomic Variants (DGV)GPATCH2L [DGVbeta]
DECIPHER (Syndromes)14:76618228-76679146  ENSG00000089916
CONAN: Copy Number AnalysisGPATCH2L 
Mutations
ICGC Data PortalGPATCH2L 
TCGA Data PortalGPATCH2L 
Broad Tumor PortalGPATCH2L
OASIS PortalGPATCH2L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGPATCH2L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGPATCH2L
BioMutasearch GPATCH2L
DgiDB (Drug Gene Interaction Database)GPATCH2L
DoCM (Curated mutations)GPATCH2L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GPATCH2L (select a term)
intoGenGPATCH2L
Cancer3DGPATCH2L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGPATCH2L
Genetic Testing Registry GPATCH2L
NextProtQ9NWQ4 [Medical]
TSGene55668
GENETestsGPATCH2L
Huge Navigator GPATCH2L [HugePedia]
snp3D : Map Gene to Disease55668
BioCentury BCIQGPATCH2L
ClinGenGPATCH2L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55668
Chemical/Pharm GKB GenePA134963976
Clinical trialGPATCH2L
Miscellaneous
canSAR (ICR)GPATCH2L (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPATCH2L
EVEXGPATCH2L
GoPubMedGPATCH2L
iHOPGPATCH2L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:06:34 CET 2017

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