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GPATCH3 (G-patch domain containing 3)

Identity

Alias_namesGPATC3
Alias_symbol (synonym)FLJ12455
Other alias
HGNC (Hugo) GPATCH3
LocusID (NCBI) 63906
Atlas_Id 54340
Location 1p36.11  [Link to chromosome band 1p36]
Location_base_pair Starts at 26890488 and ends at 26900471 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GPATCH3 (1p36.11) / CAMTA1 (1p36.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GPATCH3   25720
Cards
Entrez_Gene (NCBI)GPATCH3  63906  G-patch domain containing 3
AliasesGPATC3
GeneCards (Weizmann)GPATCH3
Ensembl hg19 (Hinxton)ENSG00000198746 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198746 [Gene_View]  chr1:26890488-26900471 [Contig_View]  GPATCH3 [Vega]
ICGC DataPortalENSG00000198746
TCGA cBioPortalGPATCH3
AceView (NCBI)GPATCH3
Genatlas (Paris)GPATCH3
WikiGenes63906
SOURCE (Princeton)GPATCH3
Genetics Home Reference (NIH)GPATCH3
Genomic and cartography
GoldenPath hg38 (UCSC)GPATCH3  -     chr1:26890488-26900471 -  1p36.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GPATCH3  -     1p36.11   [Description]    (hg19-Feb_2009)
EnsemblGPATCH3 - 1p36.11 [CytoView hg19]  GPATCH3 - 1p36.11 [CytoView hg38]
Mapping of homologs : NCBIGPATCH3 [Mapview hg19]  GPATCH3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK022517 AK057930 AK303183 AK308100 AL833886
RefSeq transcript (Entrez)NM_022078
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GPATCH3
Cluster EST : UnigeneHs.10903 [ NCBI ]
CGAP (NCI)Hs.10903
Alternative Splicing GalleryENSG00000198746
Gene ExpressionGPATCH3 [ NCBI-GEO ]   GPATCH3 [ EBI - ARRAY_EXPRESS ]   GPATCH3 [ SEEK ]   GPATCH3 [ MEM ]
Gene Expression Viewer (FireBrowse)GPATCH3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)63906
GTEX Portal (Tissue expression)GPATCH3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96I76   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96I76  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96I76
Splice isoforms : SwissVarQ96I76
PhosPhoSitePlusQ96I76
Domaine pattern : Prosite (Expaxy)G_PATCH (PS50174)   
Domains : Interpro (EBI)G_patch_dom   
Domain families : Pfam (Sanger)G-patch (PF01585)   
Domain families : Pfam (NCBI)pfam01585   
Domain families : Smart (EMBL)G_patch (SM00443)  
Conserved Domain (NCBI)GPATCH3
DMDM Disease mutations63906
Blocks (Seattle)GPATCH3
SuperfamilyQ96I76
Human Protein AtlasENSG00000198746
Peptide AtlasQ96I76
HPRD07772
IPIIPI00514759   IPI00640453   IPI00742826   
Protein Interaction databases
DIP (DOE-UCLA)Q96I76
IntAct (EBI)Q96I76
FunCoupENSG00000198746
BioGRIDGPATCH3
STRING (EMBL)GPATCH3
ZODIACGPATCH3
Ontologies - Pathways
QuickGOQ96I76
Ontology : AmiGOnucleic acid binding  biological_process  
Ontology : EGO-EBInucleic acid binding  biological_process  
NDEx NetworkGPATCH3
Atlas of Cancer Signalling NetworkGPATCH3
Wikipedia pathwaysGPATCH3
Orthology - Evolution
OrthoDB63906
GeneTree (enSembl)ENSG00000198746
Phylogenetic Trees/Animal Genes : TreeFamGPATCH3
HOVERGENQ96I76
HOGENOMQ96I76
Homologs : HomoloGeneGPATCH3
Homology/Alignments : Family Browser (UCSC)GPATCH3
Gene fusions - Rearrangements
Fusion : MitelmanGPATCH3/CAMTA1 [1p36.11/1p36.31]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGPATCH3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPATCH3
dbVarGPATCH3
ClinVarGPATCH3
1000_GenomesGPATCH3 
Exome Variant ServerGPATCH3
ExAC (Exome Aggregation Consortium)GPATCH3 (select the gene name)
Genetic variants : HAPMAP63906
Genomic Variants (DGV)GPATCH3 [DGVbeta]
DECIPHERGPATCH3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGPATCH3 
Mutations
ICGC Data PortalGPATCH3 
TCGA Data PortalGPATCH3 
Broad Tumor PortalGPATCH3
OASIS PortalGPATCH3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGPATCH3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGPATCH3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GPATCH3
DgiDB (Drug Gene Interaction Database)GPATCH3
DoCM (Curated mutations)GPATCH3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GPATCH3 (select a term)
intoGenGPATCH3
Cancer3DGPATCH3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGPATCH3
Genetic Testing Registry GPATCH3
NextProtQ96I76 [Medical]
TSGene63906
GENETestsGPATCH3
Huge Navigator GPATCH3 [HugePedia]
snp3D : Map Gene to Disease63906
BioCentury BCIQGPATCH3
ClinGenGPATCH3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD63906
Chemical/Pharm GKB GenePA162390065
Clinical trialGPATCH3
Miscellaneous
canSAR (ICR)GPATCH3 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPATCH3
EVEXGPATCH3
GoPubMedGPATCH3
iHOPGPATCH3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:17:43 CEST 2017

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