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GPATCH4 (G-patch domain containing 4)

Identity

Alias (NCBI)GPATC4
HGNC (Hugo) GPATCH4
HGNC Alias symbFLJ20249
DKFZP434F1735
HGNC Previous nameGPATC4
LocusID (NCBI) 54865
Atlas_Id 63926
Location 1q22  [Link to chromosome band 1q22]
Location_base_pair Starts at 156594308 and ends at 156601487 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ADAR (1q21.3) / GPATCH4 (1q23.1)ASH1L (1q22) / GPATCH4 (1q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)GPATCH4   25982
Cards
Entrez_Gene (NCBI)GPATCH4    G-patch domain containing 4
AliasesGPATC4
GeneCards (Weizmann)GPATCH4
Ensembl hg19 (Hinxton)ENSG00000160818 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160818 [Gene_View]  ENSG00000160818 [Sequence]  chr1:156594308-156601487 [Contig_View]  GPATCH4 [Vega]
ICGC DataPortalENSG00000160818
TCGA cBioPortalGPATCH4
AceView (NCBI)GPATCH4
Genatlas (Paris)GPATCH4
SOURCE (Princeton)GPATCH4
Genetics Home Reference (NIH)GPATCH4
Genomic and cartography
GoldenPath hg38 (UCSC)GPATCH4  -     chr1:156594308-156601487 -  1q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GPATCH4  -     1q22   [Description]    (hg19-Feb_2009)
GoldenPathGPATCH4 - 1q22 [CytoView hg19]  GPATCH4 - 1q22 [CytoView hg38]
ImmunoBaseENSG00000160818
Genome Data Viewer NCBIGPATCH4 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK000256 AK055377 AK125763 AK293026 AK301232
RefSeq transcript (Entrez)NM_015590 NM_017725 NM_182679
Consensus coding sequences : CCDS (NCBI)GPATCH4
Gene ExpressionGPATCH4 [ NCBI-GEO ]   GPATCH4 [ EBI - ARRAY_EXPRESS ]   GPATCH4 [ SEEK ]   GPATCH4 [ MEM ]
Gene Expression Viewer (FireBrowse)GPATCH4 [ Firebrowse - Broad ]
GenevisibleExpression of GPATCH4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54865
GTEX Portal (Tissue expression)GPATCH4
Human Protein AtlasENSG00000160818-GPATCH4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T3I0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T3I0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T3I0
PhosPhoSitePlusQ5T3I0
Domaine pattern : Prosite (Expaxy)G_PATCH (PS50174)   
Domains : Interpro (EBI)G_patch_dom   
Domain families : Pfam (Sanger)G-patch (PF01585)   
Domain families : Pfam (NCBI)pfam01585   
Domain families : Smart (EMBL)G_patch (SM00443)  
Conserved Domain (NCBI)GPATCH4
SuperfamilyQ5T3I0
AlphaFold pdb e-kbQ5T3I0   
Human Protein Atlas [tissue]ENSG00000160818-GPATCH4 [tissue]
HPRD13596
Protein Interaction databases
DIP (DOE-UCLA)Q5T3I0
IntAct (EBI)Q5T3I0
BioGRIDGPATCH4
STRING (EMBL)GPATCH4
ZODIACGPATCH4
Ontologies - Pathways
QuickGOQ5T3I0
Ontology : AmiGORNA binding  protein binding  
Ontology : EGO-EBIRNA binding  protein binding  
NDEx NetworkGPATCH4
Atlas of Cancer Signalling NetworkGPATCH4
Wikipedia pathwaysGPATCH4
Orthology - Evolution
OrthoDB54865
GeneTree (enSembl)ENSG00000160818
Phylogenetic Trees/Animal Genes : TreeFamGPATCH4
Homologs : HomoloGeneGPATCH4
Homology/Alignments : Family Browser (UCSC)GPATCH4
Gene fusions - Rearrangements
Fusion : QuiverGPATCH4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGPATCH4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPATCH4
dbVarGPATCH4
ClinVarGPATCH4
MonarchGPATCH4
1000_GenomesGPATCH4 
Exome Variant ServerGPATCH4
GNOMAD BrowserENSG00000160818
Varsome BrowserGPATCH4
ACMGGPATCH4 variants
VarityQ5T3I0
Genomic Variants (DGV)GPATCH4 [DGVbeta]
DECIPHERGPATCH4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGPATCH4 
Mutations
ICGC Data PortalGPATCH4 
TCGA Data PortalGPATCH4 
Broad Tumor PortalGPATCH4
OASIS PortalGPATCH4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGPATCH4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DGPATCH4
Mutations and Diseases : HGMDGPATCH4
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaGPATCH4
DgiDB (Drug Gene Interaction Database)GPATCH4
DoCM (Curated mutations)GPATCH4
CIViC (Clinical Interpretations of Variants in Cancer)GPATCH4
Cancer3DGPATCH4
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETGPATCH4
MedgenGPATCH4
Genetic Testing Registry GPATCH4
NextProtQ5T3I0 [Medical]
GENETestsGPATCH4
Target ValidationGPATCH4
Huge Navigator GPATCH4 [HugePedia]
ClinGenGPATCH4
Clinical trials, drugs, therapy
MyCancerGenomeGPATCH4
Protein Interactions : CTDGPATCH4
Pharm GKB GenePA162390084
PharosQ5T3I0
Clinical trialGPATCH4
Miscellaneous
canSAR (ICR)GPATCH4
HarmonizomeGPATCH4
DataMed IndexGPATCH4
Probes
Litterature
PubMed48 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXGPATCH4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:51:51 CEST 2021

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