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GPATCH4 (G patch domain containing 4)

Identity

Alias_namesGPATC4
Alias_symbol (synonym)FLJ20249
DKFZP434F1735
Other alias
HGNC (Hugo) GPATCH4
LocusID (NCBI) 54865
Atlas_Id 63926
Location 1q23.1  [Link to chromosome band 1q23]
Location_base_pair Starts at 156564100 and ends at 156571279 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ADAR (1q21.3) / GPATCH4 (1q23.1)ASH1L (1q22) / GPATCH4 (1q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GPATCH4   25982
Cards
Entrez_Gene (NCBI)GPATCH4  54865  G patch domain containing 4
AliasesGPATC4
GeneCards (Weizmann)GPATCH4
Ensembl hg19 (Hinxton)ENSG00000160818 [Gene_View]  chr1:156564100-156571279 [Contig_View]  GPATCH4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000160818 [Gene_View]  chr1:156564100-156571279 [Contig_View]  GPATCH4 [Vega]
ICGC DataPortalENSG00000160818
TCGA cBioPortalGPATCH4
AceView (NCBI)GPATCH4
Genatlas (Paris)GPATCH4
WikiGenes54865
SOURCE (Princeton)GPATCH4
Genetics Home Reference (NIH)GPATCH4
Genomic and cartography
GoldenPath hg19 (UCSC)GPATCH4  -     chr1:156564100-156571279 -  1q23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GPATCH4  -     1q23.1   [Description]    (hg38-Dec_2013)
EnsemblGPATCH4 - 1q23.1 [CytoView hg19]  GPATCH4 - 1q23.1 [CytoView hg38]
Mapping of homologs : NCBIGPATCH4 [Mapview hg19]  GPATCH4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000256 AK055377 AK125763 AK293026 AK301232
RefSeq transcript (Entrez)NM_015590 NM_017725 NM_182679
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)GPATCH4
Cluster EST : UnigeneHs.708599 [ NCBI ]
CGAP (NCI)Hs.708599
Alternative Splicing GalleryENSG00000160818
Gene ExpressionGPATCH4 [ NCBI-GEO ]   GPATCH4 [ EBI - ARRAY_EXPRESS ]   GPATCH4 [ SEEK ]   GPATCH4 [ MEM ]
Gene Expression Viewer (FireBrowse)GPATCH4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54865
GTEX Portal (Tissue expression)GPATCH4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T3I0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T3I0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T3I0
Splice isoforms : SwissVarQ5T3I0
PhosPhoSitePlusQ5T3I0
Domaine pattern : Prosite (Expaxy)G_PATCH (PS50174)   
Domains : Interpro (EBI)G_patch_dom   
Domain families : Pfam (Sanger)G-patch (PF01585)   
Domain families : Pfam (NCBI)pfam01585   
Domain families : Smart (EMBL)G_patch (SM00443)  
Conserved Domain (NCBI)GPATCH4
DMDM Disease mutations54865
Blocks (Seattle)GPATCH4
SuperfamilyQ5T3I0
Human Protein AtlasENSG00000160818
Peptide AtlasQ5T3I0
HPRD13596
IPIIPI00829835   IPI01008731   IPI00445571   IPI00024030   IPI00829589   IPI01018649   IPI00374476   IPI00978749   IPI00979357   
Protein Interaction databases
DIP (DOE-UCLA)Q5T3I0
IntAct (EBI)Q5T3I0
FunCoupENSG00000160818
BioGRIDGPATCH4
STRING (EMBL)GPATCH4
ZODIACGPATCH4
Ontologies - Pathways
QuickGOQ5T3I0
Ontology : AmiGOprotein binding  poly(A) RNA binding  
Ontology : EGO-EBIprotein binding  poly(A) RNA binding  
NDEx NetworkGPATCH4
Atlas of Cancer Signalling NetworkGPATCH4
Wikipedia pathwaysGPATCH4
Orthology - Evolution
OrthoDB54865
GeneTree (enSembl)ENSG00000160818
Phylogenetic Trees/Animal Genes : TreeFamGPATCH4
HOVERGENQ5T3I0
HOGENOMQ5T3I0
Homologs : HomoloGeneGPATCH4
Homology/Alignments : Family Browser (UCSC)GPATCH4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGPATCH4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPATCH4
dbVarGPATCH4
ClinVarGPATCH4
1000_GenomesGPATCH4 
Exome Variant ServerGPATCH4
ExAC (Exome Aggregation Consortium)GPATCH4 (select the gene name)
Genetic variants : HAPMAP54865
Genomic Variants (DGV)GPATCH4 [DGVbeta]
DECIPHER (Syndromes)1:156564100-156571279  ENSG00000160818
CONAN: Copy Number AnalysisGPATCH4 
Mutations
ICGC Data PortalGPATCH4 
TCGA Data PortalGPATCH4 
Broad Tumor PortalGPATCH4
OASIS PortalGPATCH4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGPATCH4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGPATCH4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GPATCH4
DgiDB (Drug Gene Interaction Database)GPATCH4
DoCM (Curated mutations)GPATCH4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GPATCH4 (select a term)
intoGenGPATCH4
Cancer3DGPATCH4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGPATCH4
Genetic Testing Registry GPATCH4
NextProtQ5T3I0 [Medical]
TSGene54865
GENETestsGPATCH4
Huge Navigator GPATCH4 [HugePedia]
snp3D : Map Gene to Disease54865
BioCentury BCIQGPATCH4
ClinGenGPATCH4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54865
Chemical/Pharm GKB GenePA162390084
Clinical trialGPATCH4
Miscellaneous
canSAR (ICR)GPATCH4 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPATCH4
EVEXGPATCH4
GoPubMedGPATCH4
iHOPGPATCH4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:06:34 CET 2017

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