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GPATCH8 (G-patch domain containing 8)

Identity

Alias (NCBI)GPATC8
KIAA0553
HGNC (Hugo) GPATCH8
HGNC Previous nameKIAA0553
 GPATC8
HGNC Previous nameKIAA0553
LocusID (NCBI) 23131
Atlas_Id 54341
Location 17q21.31  [Link to chromosome band 17q21]
Location_base_pair Starts at 44395277 and ends at 44436851 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DHX8 (17q21.31) / GPATCH8 (17q21.31)GPATCH8 (17q21.31) / C8orf46 (8q13.1)GPATCH8 (17q21.31) / COMTD1 (10q22.2)
GPATCH8 (17q21.31) / GPATCH8 (17q21.31)GPATCH8 (17q21.31) / HNRNPUL1 (19q13.2)GPATCH8 (17q21.31) / IRAK4 (12q12)
GPATCH8 (17q21.31) / MYO1D (17q11.2)GPATCH8 (17q21.31) / NPLOC4 (17q25.3)GPATCH8 (17q21.31) / SESN1 (6q21)
GPATCH8 (17q21.31) / ZMYM4 (1p34.3)RLF (1p34.2) / GPATCH8 (17q21.31)TMEM132E (17q12) / GPATCH8 (17q21.31)
TMEM98 (17q11.2) / GPATCH8 (17q21.31)DHX8 17q21.31 / GPATCH8 17q21.31GPATCH8 17q21.31 / COMTD1 10q22.2
GPATCH8 17q21.31 / MYO1D 17q11.2GPATCH8 17q21.31 / NPLOC4 17q25.3GPATCH8 17q21.31 / ZMYM4 1p34.3
RLF 1p34.2 / GPATCH8 17q21.31TMEM132E 17q12 / GPATCH8 17q21.31TMEM98 17q11.2 / GPATCH8 17q21.31

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)GPATCH8   29066
Cards
Entrez_Gene (NCBI)GPATCH8    G-patch domain containing 8
AliasesGPATC8; KIAA0553
GeneCards (Weizmann)GPATCH8
Ensembl hg19 (Hinxton)ENSG00000186566 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186566 [Gene_View]  ENSG00000186566 [Sequence]  chr17:44395277-44436851 [Contig_View]  GPATCH8 [Vega]
ICGC DataPortalENSG00000186566
TCGA cBioPortalGPATCH8
AceView (NCBI)GPATCH8
Genatlas (Paris)GPATCH8
SOURCE (Princeton)GPATCH8
Genetics Home Reference (NIH)GPATCH8
Genomic and cartography
GoldenPath hg38 (UCSC)GPATCH8  -     chr17:44395277-44436851 -  17q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GPATCH8  -     17q21.31   [Description]    (hg19-Feb_2009)
GoldenPathGPATCH8 - 17q21.31 [CytoView hg19]  GPATCH8 - 17q21.31 [CytoView hg38]
ImmunoBaseENSG00000186566
Genome Data Viewer NCBIGPATCH8 [Mapview hg19]  
OMIM614396   
Gene and transcription
Genbank (Entrez)AB011125 AK025600 BC017808 BC024147 BC063601
RefSeq transcript (Entrez)NM_001002909 NM_001304939 NM_001304940 NM_001304941 NM_001304942 NM_001304943
Consensus coding sequences : CCDS (NCBI)GPATCH8
Gene ExpressionGPATCH8 [ NCBI-GEO ]   GPATCH8 [ EBI - ARRAY_EXPRESS ]   GPATCH8 [ SEEK ]   GPATCH8 [ MEM ]
Gene Expression Viewer (FireBrowse)GPATCH8 [ Firebrowse - Broad ]
GenevisibleExpression of GPATCH8 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23131
GTEX Portal (Tissue expression)GPATCH8
Human Protein AtlasENSG00000186566-GPATCH8 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UKJ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UKJ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UKJ3
PhosPhoSitePlusQ9UKJ3
Domaine pattern : Prosite (Expaxy)G_PATCH (PS50174)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)G_patch_dom    Znf_C2H2_jaz    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)G-patch (PF01585)    zf-C2H2_jaz (PF12171)   
Domain families : Pfam (NCBI)pfam01585    pfam12171   
Domain families : Smart (EMBL)G_patch (SM00443)  
Conserved Domain (NCBI)GPATCH8
SuperfamilyQ9UKJ3
AlphaFold pdb e-kbQ9UKJ3   
Human Protein Atlas [tissue]ENSG00000186566-GPATCH8 [tissue]
HPRD11089
Protein Interaction databases
DIP (DOE-UCLA)Q9UKJ3
IntAct (EBI)Q9UKJ3
BioGRIDGPATCH8
STRING (EMBL)GPATCH8
ZODIACGPATCH8
Ontologies - Pathways
QuickGOQ9UKJ3
Ontology : AmiGORNA binding  protein binding  cellular_component  nucleus  biological_process  metal ion binding  
Ontology : EGO-EBIRNA binding  protein binding  cellular_component  nucleus  biological_process  metal ion binding  
NDEx NetworkGPATCH8
Atlas of Cancer Signalling NetworkGPATCH8
Wikipedia pathwaysGPATCH8
Orthology - Evolution
OrthoDB23131
GeneTree (enSembl)ENSG00000186566
Phylogenetic Trees/Animal Genes : TreeFamGPATCH8
Homologs : HomoloGeneGPATCH8
Homology/Alignments : Family Browser (UCSC)GPATCH8
Gene fusions - Rearrangements
Fusion : MitelmanDHX8/GPATCH8 [17q21.31/17q21.31]  
Fusion : MitelmanGPATCH8/C8orf46 [17q21.31/8q13.1]  
Fusion : MitelmanGPATCH8/COMTD1 [17q21.31/10q22.2]  
Fusion : MitelmanGPATCH8/MYO1D [17q21.31/17q11.2]  
Fusion : MitelmanGPATCH8/NPLOC4 [17q21.31/17q25.3]  
Fusion : MitelmanGPATCH8/ZMYM4 [17q21.31/1p34.3]  
Fusion : MitelmanRLF/GPATCH8 [1p34.2/17q21.31]  
Fusion : MitelmanTMEM132E/GPATCH8 [17q12/17q21.31]  
Fusion : MitelmanTMEM98/GPATCH8 [17q11.2/17q21.31]  
Fusion : QuiverGPATCH8
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGPATCH8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPATCH8
dbVarGPATCH8
ClinVarGPATCH8
MonarchGPATCH8
1000_GenomesGPATCH8 
Exome Variant ServerGPATCH8
GNOMAD BrowserENSG00000186566
Varsome BrowserGPATCH8
ACMGGPATCH8 variants
VarityQ9UKJ3
Genomic Variants (DGV)GPATCH8 [DGVbeta]
DECIPHERGPATCH8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGPATCH8 
Mutations
ICGC Data PortalGPATCH8 
TCGA Data PortalGPATCH8 
Broad Tumor PortalGPATCH8
OASIS PortalGPATCH8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGPATCH8  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DGPATCH8
Mutations and Diseases : HGMDGPATCH8
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaGPATCH8
DgiDB (Drug Gene Interaction Database)GPATCH8
DoCM (Curated mutations)GPATCH8
CIViC (Clinical Interpretations of Variants in Cancer)GPATCH8
Cancer3DGPATCH8
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614396   
Orphanet
DisGeNETGPATCH8
MedgenGPATCH8
Genetic Testing Registry GPATCH8
NextProtQ9UKJ3 [Medical]
GENETestsGPATCH8
Target ValidationGPATCH8
Huge Navigator GPATCH8 [HugePedia]
ClinGenGPATCH8
Clinical trials, drugs, therapy
MyCancerGenomeGPATCH8
Protein Interactions : CTDGPATCH8
Pharm GKB GenePA162390105
PharosQ9UKJ3
Clinical trialGPATCH8
Miscellaneous
canSAR (ICR)GPATCH8
HarmonizomeGPATCH8
DataMed IndexGPATCH8
Probes
Litterature
PubMed56 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXGPATCH8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:11:14 CEST 2021

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