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GPBP1 (GC-rich promoter binding protein 1)

Identity

Alias_symbol (synonym)DKFZp761C169
vasculin
Other aliasGPBP
SSH6
VASCULIN
HGNC (Hugo) GPBP1
LocusID (NCBI) 65056
Atlas_Id 63927
Location 5q11.2  [Link to chromosome band 5q11]
Location_base_pair Starts at 57175448 and ends at 57264679 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GPBP1 (5q11.2) / BDNF (11p14.1)GPBP1 (5q11.2) / ERI2 (16p12.3)GPBP1 (5q11.2) / GPBP1 (5q11.2)
GPBP1 (5q11.2) / MTRR (5p15.31)GPBP1 (5q11.2) / NKAIN4 (20q13.33)MIR639 (19p13.12) / GPBP1 (5q11.2)
PSMB1 (6q27) / GPBP1 (5q11.2)GPBP1 BDNFGPBP1 MTRR

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GPBP1   29520
Cards
Entrez_Gene (NCBI)GPBP1  65056  GC-rich promoter binding protein 1
AliasesGPBP; SSH6; VASCULIN
GeneCards (Weizmann)GPBP1
Ensembl hg19 (Hinxton)ENSG00000062194 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000062194 [Gene_View]  chr5:57175448-57264679 [Contig_View]  GPBP1 [Vega]
ICGC DataPortalENSG00000062194
TCGA cBioPortalGPBP1
AceView (NCBI)GPBP1
Genatlas (Paris)GPBP1
WikiGenes65056
SOURCE (Princeton)GPBP1
Genetics Home Reference (NIH)GPBP1
Genomic and cartography
GoldenPath hg38 (UCSC)GPBP1  -     chr5:57175448-57264679 +  5q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GPBP1  -     5q11.2   [Description]    (hg19-Feb_2009)
EnsemblGPBP1 - 5q11.2 [CytoView hg19]  GPBP1 - 5q11.2 [CytoView hg38]
Mapping of homologs : NCBIGPBP1 [Mapview hg19]  GPBP1 [Mapview hg38]
OMIM608412   
Gene and transcription
Genbank (Entrez)AI200911 AK024807 AK307505 AK311625 AL136844
RefSeq transcript (Entrez)NM_001127235 NM_001127236 NM_001203246 NM_001331037 NM_022913
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GPBP1
Cluster EST : UnigeneHs.444279 [ NCBI ]
CGAP (NCI)Hs.444279
Alternative Splicing GalleryENSG00000062194
Gene ExpressionGPBP1 [ NCBI-GEO ]   GPBP1 [ EBI - ARRAY_EXPRESS ]   GPBP1 [ SEEK ]   GPBP1 [ MEM ]
Gene Expression Viewer (FireBrowse)GPBP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)65056
GTEX Portal (Tissue expression)GPBP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86WP2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86WP2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86WP2
Splice isoforms : SwissVarQ86WP2
PhosPhoSitePlusQ86WP2
Domains : Interpro (EBI)Vasculin_fam   
Domain families : Pfam (Sanger)Vasculin (PF15337)   
Domain families : Pfam (NCBI)pfam15337   
Conserved Domain (NCBI)GPBP1
DMDM Disease mutations65056
Blocks (Seattle)GPBP1
SuperfamilyQ86WP2
Human Protein AtlasENSG00000062194
Peptide AtlasQ86WP2
HPRD16333
IPIIPI00748364   IPI00304481   IPI00888796   IPI00887655   IPI01010173   IPI00895781   
Protein Interaction databases
DIP (DOE-UCLA)Q86WP2
IntAct (EBI)Q86WP2
FunCoupENSG00000062194
BioGRIDGPBP1
STRING (EMBL)GPBP1
ZODIACGPBP1
Ontologies - Pathways
QuickGOQ86WP2
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  cytosol  plasma membrane  transcription, DNA-templated  regulation of transcription, DNA-templated  intracellular membrane-bounded organelle  positive regulation of transcription, DNA-templated  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  cytosol  plasma membrane  transcription, DNA-templated  regulation of transcription, DNA-templated  intracellular membrane-bounded organelle  positive regulation of transcription, DNA-templated  
NDEx NetworkGPBP1
Atlas of Cancer Signalling NetworkGPBP1
Wikipedia pathwaysGPBP1
Orthology - Evolution
OrthoDB65056
GeneTree (enSembl)ENSG00000062194
Phylogenetic Trees/Animal Genes : TreeFamGPBP1
HOVERGENQ86WP2
HOGENOMQ86WP2
Homologs : HomoloGeneGPBP1
Homology/Alignments : Family Browser (UCSC)GPBP1
Gene fusions - Rearrangements
Fusion: TCGAGPBP1 BDNF
Fusion: TCGAGPBP1 MTRR
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGPBP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPBP1
dbVarGPBP1
ClinVarGPBP1
1000_GenomesGPBP1 
Exome Variant ServerGPBP1
ExAC (Exome Aggregation Consortium)GPBP1 (select the gene name)
Genetic variants : HAPMAP65056
Genomic Variants (DGV)GPBP1 [DGVbeta]
DECIPHERGPBP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGPBP1 
Mutations
ICGC Data PortalGPBP1 
TCGA Data PortalGPBP1 
Broad Tumor PortalGPBP1
OASIS PortalGPBP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGPBP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGPBP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GPBP1
DgiDB (Drug Gene Interaction Database)GPBP1
DoCM (Curated mutations)GPBP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GPBP1 (select a term)
intoGenGPBP1
Cancer3DGPBP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608412   
Orphanet
MedgenGPBP1
Genetic Testing Registry GPBP1
NextProtQ86WP2 [Medical]
TSGene65056
GENETestsGPBP1
Target ValidationGPBP1
Huge Navigator GPBP1 [HugePedia]
snp3D : Map Gene to Disease65056
BioCentury BCIQGPBP1
ClinGenGPBP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD65056
Chemical/Pharm GKB GenePA142671714
Clinical trialGPBP1
Miscellaneous
canSAR (ICR)GPBP1 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPBP1
EVEXGPBP1
GoPubMedGPBP1
iHOPGPBP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:09:41 CEST 2017

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