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GPBP1L1 (GC-rich promoter binding protein 1 like 1)

Identity

Alias_namesGC-rich promoter binding protein 1-like 1
Alias_symbol (synonym)SP192
Other alias
HGNC (Hugo) GPBP1L1
LocusID (NCBI) 60313
Atlas_Id 53006
Location 1p34.1  [Link to chromosome band 1p34]
Location_base_pair Starts at 46092976 and ends at 46152302 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GPBP1L1 (1p34.1) / CACNA2D3 (3p21.1)GPBP1L1 (1p34.1) / MAST2 (1p34.1)IPP (1p34.1) / GPBP1L1 (1p34.1)
SCMH1 (1p34.2) / GPBP1L1 (1p34.1)GPBP1L1 1p34.1 / MAST2 1p34.1SCMH1 1p34.2 / GPBP1L1 1p34.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GPBP1L1   28843
Cards
Entrez_Gene (NCBI)GPBP1L1  60313  GC-rich promoter binding protein 1 like 1
AliasesSP192
GeneCards (Weizmann)GPBP1L1
Ensembl hg19 (Hinxton)ENSG00000159592 [Gene_View]  chr1:46092976-46152302 [Contig_View]  GPBP1L1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000159592 [Gene_View]  chr1:46092976-46152302 [Contig_View]  GPBP1L1 [Vega]
ICGC DataPortalENSG00000159592
TCGA cBioPortalGPBP1L1
AceView (NCBI)GPBP1L1
Genatlas (Paris)GPBP1L1
WikiGenes60313
SOURCE (Princeton)GPBP1L1
Genetics Home Reference (NIH)GPBP1L1
Genomic and cartography
GoldenPath hg19 (UCSC)GPBP1L1  -     chr1:46092976-46152302 -  1p34.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GPBP1L1  -     1p34.1   [Description]    (hg38-Dec_2013)
EnsemblGPBP1L1 - 1p34.1 [CytoView hg19]  GPBP1L1 - 1p34.1 [CytoView hg38]
Mapping of homologs : NCBIGPBP1L1 [Mapview hg19]  GPBP1L1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF177334 AK024972 AK027212 AK225197 AL834194
RefSeq transcript (Entrez)NM_021639
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)GPBP1L1
Cluster EST : UnigeneHs.238432 [ NCBI ]
CGAP (NCI)Hs.238432
Alternative Splicing GalleryENSG00000159592
Gene ExpressionGPBP1L1 [ NCBI-GEO ]   GPBP1L1 [ EBI - ARRAY_EXPRESS ]   GPBP1L1 [ SEEK ]   GPBP1L1 [ MEM ]
Gene Expression Viewer (FireBrowse)GPBP1L1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)60313
GTEX Portal (Tissue expression)GPBP1L1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HC44   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HC44  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HC44
Splice isoforms : SwissVarQ9HC44
PhosPhoSitePlusQ9HC44
Domains : Interpro (EBI)Vasculin_fam   
Domain families : Pfam (Sanger)Vasculin (PF15337)   
Domain families : Pfam (NCBI)pfam15337   
Conserved Domain (NCBI)GPBP1L1
DMDM Disease mutations60313
Blocks (Seattle)GPBP1L1
SuperfamilyQ9HC44
Human Protein AtlasENSG00000159592
Peptide AtlasQ9HC44
HPRD15418
IPIIPI00550026   
Protein Interaction databases
DIP (DOE-UCLA)Q9HC44
IntAct (EBI)Q9HC44
FunCoupENSG00000159592
BioGRIDGPBP1L1
STRING (EMBL)GPBP1L1
ZODIACGPBP1L1
Ontologies - Pathways
QuickGOQ9HC44
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  
NDEx NetworkGPBP1L1
Atlas of Cancer Signalling NetworkGPBP1L1
Wikipedia pathwaysGPBP1L1
Orthology - Evolution
OrthoDB60313
GeneTree (enSembl)ENSG00000159592
Phylogenetic Trees/Animal Genes : TreeFamGPBP1L1
HOVERGENQ9HC44
HOGENOMQ9HC44
Homologs : HomoloGeneGPBP1L1
Homology/Alignments : Family Browser (UCSC)GPBP1L1
Gene fusions - Rearrangements
Fusion : MitelmanIPP/GPBP1L1 [1p34.1/1p34.1]  [t(1;1)(p34;p34)]  
Fusion : MitelmanSCMH1/GPBP1L1 [1p34.2/1p34.1]  [t(1;1)(p34;p34)]  
Fusion: TCGASCMH1 1p34.2 GPBP1L1 1p34.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGPBP1L1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPBP1L1
dbVarGPBP1L1
ClinVarGPBP1L1
1000_GenomesGPBP1L1 
Exome Variant ServerGPBP1L1
ExAC (Exome Aggregation Consortium)GPBP1L1 (select the gene name)
Genetic variants : HAPMAP60313
Genomic Variants (DGV)GPBP1L1 [DGVbeta]
DECIPHER (Syndromes)1:46092976-46152302  ENSG00000159592
CONAN: Copy Number AnalysisGPBP1L1 
Mutations
ICGC Data PortalGPBP1L1 
TCGA Data PortalGPBP1L1 
Broad Tumor PortalGPBP1L1
OASIS PortalGPBP1L1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGPBP1L1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGPBP1L1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GPBP1L1
DgiDB (Drug Gene Interaction Database)GPBP1L1
DoCM (Curated mutations)GPBP1L1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GPBP1L1 (select a term)
intoGenGPBP1L1
Cancer3DGPBP1L1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGPBP1L1
Genetic Testing Registry GPBP1L1
NextProtQ9HC44 [Medical]
TSGene60313
GENETestsGPBP1L1
Huge Navigator GPBP1L1 [HugePedia]
snp3D : Map Gene to Disease60313
BioCentury BCIQGPBP1L1
ClinGenGPBP1L1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD60313
Chemical/Pharm GKB GenePA142671715
Clinical trialGPBP1L1
Miscellaneous
canSAR (ICR)GPBP1L1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPBP1L1
EVEXGPBP1L1
GoPubMedGPBP1L1
iHOPGPBP1L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:02:50 CEST 2017

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