Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GPC2 (glypican 2)

Identity

Alias_namesglypican 2 (cerebroglycan)
Alias_symbol (synonym)cerebroglycan
FLJ38962
DKFZp547M109
Other alias-
HGNC (Hugo) GPC2
LocusID (NCBI) 221914
Atlas_Id 63928
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 100169606 and ends at 100177426 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GPC2   4450
Cards
Entrez_Gene (NCBI)GPC2  221914  glypican 2
Aliases
GeneCards (Weizmann)GPC2
Ensembl hg19 (Hinxton)ENSG00000213420 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213420 [Gene_View]  chr7:100169606-100177426 [Contig_View]  GPC2 [Vega]
ICGC DataPortalENSG00000213420
TCGA cBioPortalGPC2
AceView (NCBI)GPC2
Genatlas (Paris)GPC2
WikiGenes221914
SOURCE (Princeton)GPC2
Genetics Home Reference (NIH)GPC2
Genomic and cartography
GoldenPath hg38 (UCSC)GPC2  -     chr7:100169606-100177426 -  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GPC2  -     7q22.1   [Description]    (hg19-Feb_2009)
EnsemblGPC2 - 7q22.1 [CytoView hg19]  GPC2 - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBIGPC2 [Mapview hg19]  GPC2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI863264 AK096281 AL834418 AM392909 AY093588
RefSeq transcript (Entrez)NM_152742
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GPC2
Cluster EST : UnigeneHs.211701 [ NCBI ]
CGAP (NCI)Hs.211701
Alternative Splicing GalleryENSG00000213420
Gene ExpressionGPC2 [ NCBI-GEO ]   GPC2 [ EBI - ARRAY_EXPRESS ]   GPC2 [ SEEK ]   GPC2 [ MEM ]
Gene Expression Viewer (FireBrowse)GPC2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221914
GTEX Portal (Tissue expression)GPC2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N158   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N158  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N158
Splice isoforms : SwissVarQ8N158
PhosPhoSitePlusQ8N158
Domaine pattern : Prosite (Expaxy)GLYPICAN (PS01207)   
Domains : Interpro (EBI)Glypican    Glypican-2    Glypican_CS   
Domain families : Pfam (Sanger)Glypican (PF01153)   
Domain families : Pfam (NCBI)pfam01153   
Conserved Domain (NCBI)GPC2
DMDM Disease mutations221914
Blocks (Seattle)GPC2
SuperfamilyQ8N158
Human Protein AtlasENSG00000213420
Peptide AtlasQ8N158
HPRD17051
IPIIPI00166091   
Protein Interaction databases
DIP (DOE-UCLA)Q8N158
IntAct (EBI)Q8N158
FunCoupENSG00000213420
BioGRIDGPC2
STRING (EMBL)GPC2
ZODIACGPC2
Ontologies - Pathways
QuickGOQ8N158
Ontology : AmiGOretinoid metabolic process  proteinaceous extracellular matrix  extracellular space  endoplasmic reticulum  Golgi lumen  plasma membrane  glycosaminoglycan biosynthetic process  glycosaminoglycan catabolic process  smoothened signaling pathway  neuron differentiation  glycosaminoglycan metabolic process  anchored component of membrane  lysosomal lumen  heparan sulfate proteoglycan binding  
Ontology : EGO-EBIretinoid metabolic process  proteinaceous extracellular matrix  extracellular space  endoplasmic reticulum  Golgi lumen  plasma membrane  glycosaminoglycan biosynthetic process  glycosaminoglycan catabolic process  smoothened signaling pathway  neuron differentiation  glycosaminoglycan metabolic process  anchored component of membrane  lysosomal lumen  heparan sulfate proteoglycan binding  
NDEx NetworkGPC2
Atlas of Cancer Signalling NetworkGPC2
Wikipedia pathwaysGPC2
Orthology - Evolution
OrthoDB221914
GeneTree (enSembl)ENSG00000213420
Phylogenetic Trees/Animal Genes : TreeFamGPC2
HOVERGENQ8N158
HOGENOMQ8N158
Homologs : HomoloGeneGPC2
Homology/Alignments : Family Browser (UCSC)GPC2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGPC2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPC2
dbVarGPC2
ClinVarGPC2
1000_GenomesGPC2 
Exome Variant ServerGPC2
ExAC (Exome Aggregation Consortium)GPC2 (select the gene name)
Genetic variants : HAPMAP221914
Genomic Variants (DGV)GPC2 [DGVbeta]
DECIPHERGPC2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGPC2 
Mutations
ICGC Data PortalGPC2 
TCGA Data PortalGPC2 
Broad Tumor PortalGPC2
OASIS PortalGPC2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGPC2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGPC2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GPC2
DgiDB (Drug Gene Interaction Database)GPC2
DoCM (Curated mutations)GPC2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GPC2 (select a term)
intoGenGPC2
Cancer3DGPC2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGPC2
Genetic Testing Registry GPC2
NextProtQ8N158 [Medical]
TSGene221914
GENETestsGPC2
Target ValidationGPC2
Huge Navigator GPC2 [HugePedia]
snp3D : Map Gene to Disease221914
BioCentury BCIQGPC2
ClinGenGPC2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221914
Chemical/Pharm GKB GenePA28831
Clinical trialGPC2
Miscellaneous
canSAR (ICR)GPC2 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPC2
EVEXGPC2
GoPubMedGPC2
iHOPGPC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:51:06 CEST 2017

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