Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

GPC6-AS1 (GPC6 antisense RNA 1)

Identity

Alias_namesGPC6 antisense RNA 1 (non-protein coding)
Other alias-
HGNC (Hugo) GPC6-AS1
LocusID (NCBI) 100873972
Atlas_Id 63932
Location 13q31.3  [Link to chromosome band 13q31]
Location_base_pair Starts at 94154193 and ends at 94187991 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GPC6-AS1   39909
Cards
Entrez_Gene (NCBI)GPC6-AS1  100873972  GPC6 antisense RNA 1
Aliases
GeneCards (Weizmann)GPC6-AS1
Ensembl hg19 (Hinxton)ENSG00000236520 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000236520 [Gene_View]  chr13:94154193-94187991 [Contig_View]  GPC6-AS1 [Vega]
ICGC DataPortalENSG00000236520
TCGA cBioPortalGPC6-AS1
AceView (NCBI)GPC6-AS1
Genatlas (Paris)GPC6-AS1
WikiGenes100873972
SOURCE (Princeton)GPC6-AS1
Genetics Home Reference (NIH)GPC6-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)GPC6-AS1  -     chr13:94154193-94187991 -  13q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GPC6-AS1  -     13q31.3   [Description]    (hg19-Feb_2009)
EnsemblGPC6-AS1 - 13q31.3 [CytoView hg19]  GPC6-AS1 - 13q31.3 [CytoView hg38]
Mapping of homologs : NCBIGPC6-AS1 [Mapview hg19]  GPC6-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI698767 AW235508
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GPC6-AS1
Cluster EST : UnigeneHs.670344 [ NCBI ]
CGAP (NCI)Hs.670344
Alternative Splicing GalleryENSG00000236520
Gene ExpressionGPC6-AS1 [ NCBI-GEO ]   GPC6-AS1 [ EBI - ARRAY_EXPRESS ]   GPC6-AS1 [ SEEK ]   GPC6-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)GPC6-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100873972
GTEX Portal (Tissue expression)GPC6-AS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GPC6-AS1
DMDM Disease mutations100873972
Blocks (Seattle)GPC6-AS1
Human Protein AtlasENSG00000236520
Protein Interaction databases
FunCoupENSG00000236520
BioGRIDGPC6-AS1
STRING (EMBL)GPC6-AS1
ZODIACGPC6-AS1
Ontologies - Pathways
Huge Navigator GPC6-AS1 [HugePedia]
snp3D : Map Gene to Disease100873972
BioCentury BCIQGPC6-AS1
ClinGenGPC6-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100873972
Clinical trialGPC6-AS1
Miscellaneous
canSAR (ICR)GPC6-AS1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPC6-AS1
EVEXGPC6-AS1
GoPubMedGPC6-AS1
iHOPGPC6-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:09:42 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.