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GPHA2 (glycoprotein hormone alpha 2)

Identity

Alias_symbol (synonym)GPA2
ZSIG51
A2
MGC126572
Other alias
HGNC (Hugo) GPHA2
LocusID (NCBI) 170589
Atlas_Id 63935
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 64701943 and ends at 64703360 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GPHA2   18054
Cards
Entrez_Gene (NCBI)GPHA2  170589  glycoprotein hormone alpha 2
AliasesA2; GPA2; ZSIG51
GeneCards (Weizmann)GPHA2
Ensembl hg19 (Hinxton)ENSG00000149735 [Gene_View]  chr11:64701943-64703360 [Contig_View]  GPHA2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000149735 [Gene_View]  chr11:64701943-64703360 [Contig_View]  GPHA2 [Vega]
ICGC DataPortalENSG00000149735
TCGA cBioPortalGPHA2
AceView (NCBI)GPHA2
Genatlas (Paris)GPHA2
WikiGenes170589
SOURCE (Princeton)GPHA2
Genetics Home Reference (NIH)GPHA2
Genomic and cartography
GoldenPath hg19 (UCSC)GPHA2  -     chr11:64701943-64703360 -  11q13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GPHA2  -     11q13.1   [Description]    (hg38-Dec_2013)
EnsemblGPHA2 - 11q13.1 [CytoView hg19]  GPHA2 - 11q13.1 [CytoView hg38]
Mapping of homologs : NCBIGPHA2 [Mapview hg19]  GPHA2 [Mapview hg38]
OMIM609651   
Gene and transcription
Genbank (Entrez)AF260739 BC093960 BC093962 BC101523
RefSeq transcript (Entrez)NM_130769
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)GPHA2
Cluster EST : UnigeneHs.436119 [ NCBI ]
CGAP (NCI)Hs.436119
Alternative Splicing GalleryENSG00000149735
Gene ExpressionGPHA2 [ NCBI-GEO ]   GPHA2 [ EBI - ARRAY_EXPRESS ]   GPHA2 [ SEEK ]   GPHA2 [ MEM ]
Gene Expression Viewer (FireBrowse)GPHA2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)170589
GTEX Portal (Tissue expression)GPHA2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96T91   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96T91  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96T91
Splice isoforms : SwissVarQ96T91
PhosPhoSitePlusQ96T91
Domaine pattern : Prosite (Expaxy)CTCK_2 (PS01225)    GLYCO_HORMONE_ALPHA_3 (PS50277)   
Domains : Interpro (EBI)Cys_knot_C    Cystine-knot_cytokine    Glyco_hormone   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GPHA2
DMDM Disease mutations170589
Blocks (Seattle)GPHA2
SuperfamilyQ96T91
Human Protein AtlasENSG00000149735
Peptide AtlasQ96T91
HPRD17052
IPIIPI00045935   IPI00981519   
Protein Interaction databases
DIP (DOE-UCLA)Q96T91
IntAct (EBI)Q96T91
FunCoupENSG00000149735
BioGRIDGPHA2
STRING (EMBL)GPHA2
ZODIACGPHA2
Ontologies - Pathways
QuickGOQ96T91
Ontology : AmiGOhormone activity  extracellular region  positive regulation of protein targeting to mitochondrion  
Ontology : EGO-EBIhormone activity  extracellular region  positive regulation of protein targeting to mitochondrion  
NDEx NetworkGPHA2
Atlas of Cancer Signalling NetworkGPHA2
Wikipedia pathwaysGPHA2
Orthology - Evolution
OrthoDB170589
GeneTree (enSembl)ENSG00000149735
Phylogenetic Trees/Animal Genes : TreeFamGPHA2
HOVERGENQ96T91
HOGENOMQ96T91
Homologs : HomoloGeneGPHA2
Homology/Alignments : Family Browser (UCSC)GPHA2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGPHA2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPHA2
dbVarGPHA2
ClinVarGPHA2
1000_GenomesGPHA2 
Exome Variant ServerGPHA2
ExAC (Exome Aggregation Consortium)GPHA2 (select the gene name)
Genetic variants : HAPMAP170589
Genomic Variants (DGV)GPHA2 [DGVbeta]
DECIPHER (Syndromes)11:64701943-64703360  ENSG00000149735
CONAN: Copy Number AnalysisGPHA2 
Mutations
ICGC Data PortalGPHA2 
TCGA Data PortalGPHA2 
Broad Tumor PortalGPHA2
OASIS PortalGPHA2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGPHA2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGPHA2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GPHA2
DgiDB (Drug Gene Interaction Database)GPHA2
DoCM (Curated mutations)GPHA2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GPHA2 (select a term)
intoGenGPHA2
Cancer3DGPHA2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609651   
Orphanet
MedgenGPHA2
Genetic Testing Registry GPHA2
NextProtQ96T91 [Medical]
TSGene170589
GENETestsGPHA2
Huge Navigator GPHA2 [HugePedia]
snp3D : Map Gene to Disease170589
BioCentury BCIQGPHA2
ClinGenGPHA2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD170589
Chemical/Pharm GKB GenePA28839
Clinical trialGPHA2
Miscellaneous
canSAR (ICR)GPHA2 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPHA2
EVEXGPHA2
GoPubMedGPHA2
iHOPGPHA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:06:35 CET 2017

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