Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

GPIHBP1 (glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1)

Identity

Alias_namesGPI anchored high density lipoprotein binding protein 1
Alias_symbol (synonym)LOC338328
GPI-HBP1
Other aliasHYPL1D
HGNC (Hugo) GPIHBP1
LocusID (NCBI) 338328
Atlas_Id 63937
Location 8q24.3  [Link to chromosome band 8q24]
Location_base_pair Starts at 143213193 and ends at 143217170 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GPIHBP1   24945
Cards
Entrez_Gene (NCBI)GPIHBP1  338328  glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1
AliasesGPI-HBP1; HYPL1D
GeneCards (Weizmann)GPIHBP1
Ensembl hg19 (Hinxton)ENSG00000277494 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000277494 [Gene_View]  chr8:143213193-143217170 [Contig_View]  GPIHBP1 [Vega]
ICGC DataPortalENSG00000277494
TCGA cBioPortalGPIHBP1
AceView (NCBI)GPIHBP1
Genatlas (Paris)GPIHBP1
WikiGenes338328
SOURCE (Princeton)GPIHBP1
Genetics Home Reference (NIH)GPIHBP1
Genomic and cartography
GoldenPath hg38 (UCSC)GPIHBP1  -     chr8:143213193-143217170 +  8q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GPIHBP1  -     8q24.3   [Description]    (hg19-Feb_2009)
EnsemblGPIHBP1 - 8q24.3 [CytoView hg19]  GPIHBP1 - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBIGPIHBP1 [Mapview hg19]  GPIHBP1 [Mapview hg38]
OMIM612757   615947   
Gene and transcription
Genbank (Entrez)AF088057 AY245915 BC035810 BC063857 HQ447479
RefSeq transcript (Entrez)NM_001301772 NM_178172
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GPIHBP1
Cluster EST : UnigeneHs.426410 [ NCBI ]
CGAP (NCI)Hs.426410
Alternative Splicing GalleryENSG00000277494
Gene ExpressionGPIHBP1 [ NCBI-GEO ]   GPIHBP1 [ EBI - ARRAY_EXPRESS ]   GPIHBP1 [ SEEK ]   GPIHBP1 [ MEM ]
Gene Expression Viewer (FireBrowse)GPIHBP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)338328
GTEX Portal (Tissue expression)GPIHBP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IV16   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IV16  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IV16
Splice isoforms : SwissVarQ8IV16
PhosPhoSitePlusQ8IV16
Domains : Interpro (EBI)LY6_UPA_recep-like   
Domain families : Pfam (Sanger)UPAR_LY6 (PF00021)   
Domain families : Pfam (NCBI)pfam00021   
Conserved Domain (NCBI)GPIHBP1
DMDM Disease mutations338328
Blocks (Seattle)GPIHBP1
SuperfamilyQ8IV16
Human Protein AtlasENSG00000277494
Peptide AtlasQ8IV16
HPRD17347
IPIIPI00216823   
Protein Interaction databases
DIP (DOE-UCLA)Q8IV16
IntAct (EBI)Q8IV16
FunCoupENSG00000277494
BioGRIDGPIHBP1
STRING (EMBL)GPIHBP1
ZODIACGPIHBP1
Ontologies - Pathways
QuickGOQ8IV16
Ontology : AmiGOretinoid metabolic process  extracellular region  intracellular  plasma membrane  C-terminal protein lipidation  lipid transport  intracellular protein transport  high-density lipoprotein particle binding  lipid binding  protein transmembrane transporter activity  external side of plasma membrane  basolateral plasma membrane  apical plasma membrane  protein import  anchored component of external side of plasma membrane  high-density lipoprotein particle  protein localization to cell surface  lipase binding  chylomicron binding  lipoprotein metabolic process  cholesterol homeostasis  transcytosis  protein stabilization  positive regulation of lipoprotein lipase activity  triglyceride homeostasis  response to heparin  protein transmembrane transport  lipoprotein particle binding  positive regulation of chylomicron remnant clearance  
Ontology : EGO-EBIretinoid metabolic process  extracellular region  intracellular  plasma membrane  C-terminal protein lipidation  lipid transport  intracellular protein transport  high-density lipoprotein particle binding  lipid binding  protein transmembrane transporter activity  external side of plasma membrane  basolateral plasma membrane  apical plasma membrane  protein import  anchored component of external side of plasma membrane  high-density lipoprotein particle  protein localization to cell surface  lipase binding  chylomicron binding  lipoprotein metabolic process  cholesterol homeostasis  transcytosis  protein stabilization  positive regulation of lipoprotein lipase activity  triglyceride homeostasis  response to heparin  protein transmembrane transport  lipoprotein particle binding  positive regulation of chylomicron remnant clearance  
NDEx NetworkGPIHBP1
Atlas of Cancer Signalling NetworkGPIHBP1
Wikipedia pathwaysGPIHBP1
Orthology - Evolution
OrthoDB338328
GeneTree (enSembl)ENSG00000277494
Phylogenetic Trees/Animal Genes : TreeFamGPIHBP1
HOVERGENQ8IV16
HOGENOMQ8IV16
Homologs : HomoloGeneGPIHBP1
Homology/Alignments : Family Browser (UCSC)GPIHBP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGPIHBP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPIHBP1
dbVarGPIHBP1
ClinVarGPIHBP1
1000_GenomesGPIHBP1 
Exome Variant ServerGPIHBP1
ExAC (Exome Aggregation Consortium)GPIHBP1 (select the gene name)
Genetic variants : HAPMAP338328
Genomic Variants (DGV)GPIHBP1 [DGVbeta]
DECIPHERGPIHBP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGPIHBP1 
Mutations
ICGC Data PortalGPIHBP1 
TCGA Data PortalGPIHBP1 
Broad Tumor PortalGPIHBP1
OASIS PortalGPIHBP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGPIHBP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGPIHBP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GPIHBP1
DgiDB (Drug Gene Interaction Database)GPIHBP1
DoCM (Curated mutations)GPIHBP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GPIHBP1 (select a term)
intoGenGPIHBP1
Cancer3DGPIHBP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612757    615947   
Orphanet23491   
MedgenGPIHBP1
Genetic Testing Registry GPIHBP1
NextProtQ8IV16 [Medical]
TSGene338328
GENETestsGPIHBP1
Target ValidationGPIHBP1
Huge Navigator GPIHBP1 [HugePedia]
snp3D : Map Gene to Disease338328
BioCentury BCIQGPIHBP1
ClinGenGPIHBP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD338328
Chemical/Pharm GKB GenePA162390135
Clinical trialGPIHBP1
Miscellaneous
canSAR (ICR)GPIHBP1 (select the gene name)
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPIHBP1
EVEXGPIHBP1
GoPubMedGPIHBP1
iHOPGPIHBP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:51:07 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.