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GPKOW (G-patch domain and KOW motifs)

Identity

Alias (NCBI)GPATC5
GPATCH5
Mos2
Spp2
T54
HGNC (Hugo) GPKOW
HGNC Alias symbT54
GPATC5
GPATCH5
Spp2
HGNC Alias nameG patch domain containing 5
LocusID (NCBI) 27238
Atlas_Id 63938
Location Xp11.23  [Link to chromosome band Xp11]
Location_base_pair Starts at 49113407 and ends at 49123735 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
KRI1 (19p13.2) / GPKOW (Xp11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)GPKOW   30677
Cards
Entrez_Gene (NCBI)GPKOW    G-patch domain and KOW motifs
AliasesGPATC5; GPATCH5; Mos2; Spp2; 
T54
GeneCards (Weizmann)GPKOW
Ensembl hg19 (Hinxton)ENSG00000068394 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000068394 [Gene_View]  ENSG00000068394 [Sequence]  chrX:49113407-49123735 [Contig_View]  GPKOW [Vega]
ICGC DataPortalENSG00000068394
TCGA cBioPortalGPKOW
AceView (NCBI)GPKOW
Genatlas (Paris)GPKOW
SOURCE (Princeton)GPKOW
Genetics Home Reference (NIH)GPKOW
Genomic and cartography
GoldenPath hg38 (UCSC)GPKOW  -     chrX:49113407-49123735 -  Xp11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GPKOW  -     Xp11.23   [Description]    (hg19-Feb_2009)
GoldenPathGPKOW - Xp11.23 [CytoView hg19]  GPKOW - Xp11.23 [CytoView hg38]
ImmunoBaseENSG00000068394
Genome Data Viewer NCBIGPKOW [Mapview hg19]  
OMIM301003   
Gene and transcription
Genbank (Entrez)AB209806 BC000397 BC003148 BE795098 U66359
RefSeq transcript (Entrez)NM_015698
Consensus coding sequences : CCDS (NCBI)GPKOW
Gene ExpressionGPKOW [ NCBI-GEO ]   GPKOW [ EBI - ARRAY_EXPRESS ]   GPKOW [ SEEK ]   GPKOW [ MEM ]
Gene Expression Viewer (FireBrowse)GPKOW [ Firebrowse - Broad ]
GenevisibleExpression of GPKOW in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27238
GTEX Portal (Tissue expression)GPKOW
Human Protein AtlasENSG00000068394-GPKOW [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92917   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92917  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92917
PhosPhoSitePlusQ92917
Domaine pattern : Prosite (Expaxy)G_PATCH (PS50174)   
Domains : Interpro (EBI)G_patch_dom    GPKOW_KOW1    GPKOW_KOW2    KOW    Spp2/MOS2_G-patch   
Domain families : Pfam (Sanger)G-patch_2 (PF12656)    KOW (PF00467)   
Domain families : Pfam (NCBI)pfam12656    pfam00467   
Domain families : Smart (EMBL)G_patch (SM00443)  KOW (SM00739)  
Conserved Domain (NCBI)GPKOW
SuperfamilyQ92917
AlphaFold pdb e-kbQ92917   
Human Protein Atlas [tissue]ENSG00000068394-GPKOW [tissue]
HPRD06737
Protein Interaction databases
DIP (DOE-UCLA)Q92917
IntAct (EBI)Q92917
BioGRIDGPKOW
STRING (EMBL)GPKOW
ZODIACGPKOW
Ontologies - Pathways
QuickGOQ92917
Ontology : AmiGOmRNA splicing, via spliceosome  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  RNA binding  protein binding  nucleus  nucleoplasm  nucleoplasm  spliceosomal complex  spliceosomal complex  
Ontology : EGO-EBImRNA splicing, via spliceosome  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  RNA binding  protein binding  nucleus  nucleoplasm  nucleoplasm  spliceosomal complex  spliceosomal complex  
NDEx NetworkGPKOW
Atlas of Cancer Signalling NetworkGPKOW
Wikipedia pathwaysGPKOW
Orthology - Evolution
OrthoDB27238
GeneTree (enSembl)ENSG00000068394
Phylogenetic Trees/Animal Genes : TreeFamGPKOW
Homologs : HomoloGeneGPKOW
Homology/Alignments : Family Browser (UCSC)GPKOW
Gene fusions - Rearrangements
Fusion : QuiverGPKOW
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGPKOW [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPKOW
dbVarGPKOW
ClinVarGPKOW
MonarchGPKOW
1000_GenomesGPKOW 
Exome Variant ServerGPKOW
GNOMAD BrowserENSG00000068394
Varsome BrowserGPKOW
ACMGGPKOW variants
VarityQ92917
Genomic Variants (DGV)GPKOW [DGVbeta]
DECIPHERGPKOW [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGPKOW 
Mutations
ICGC Data PortalGPKOW 
TCGA Data PortalGPKOW 
Broad Tumor PortalGPKOW
OASIS PortalGPKOW [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGPKOW  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DGPKOW
Mutations and Diseases : HGMDGPKOW
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaGPKOW
DgiDB (Drug Gene Interaction Database)GPKOW
DoCM (Curated mutations)GPKOW
CIViC (Clinical Interpretations of Variants in Cancer)GPKOW
Cancer3DGPKOW
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM301003   
Orphanet
DisGeNETGPKOW
MedgenGPKOW
Genetic Testing Registry GPKOW
NextProtQ92917 [Medical]
GENETestsGPKOW
Target ValidationGPKOW
Huge Navigator GPKOW [HugePedia]
ClinGenGPKOW
Clinical trials, drugs, therapy
MyCancerGenomeGPKOW
Protein Interactions : CTDGPKOW
Pharm GKB GenePA134956055
PharosQ92917
Clinical trialGPKOW
Miscellaneous
canSAR (ICR)GPKOW
HarmonizomeGPKOW
DataMed IndexGPKOW
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXGPKOW
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:51:53 CEST 2021

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