Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

GPKOW (G-patch domain and KOW motifs)

Identity

Alias_symbol (synonym)T54
GPATC5
GPATCH5
Spp2
Other alias
HGNC (Hugo) GPKOW
LocusID (NCBI) 27238
Atlas_Id 63938
Location Xp11.23  [Link to chromosome band Xp11]
Location_base_pair Starts at 49113385 and ends at 49123801 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
KRI1 (19p13.2) / GPKOW (Xp11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GPKOW   30677
Cards
Entrez_Gene (NCBI)GPKOW  27238  G-patch domain and KOW motifs
AliasesGPATC5; GPATCH5; Spp2; T54
GeneCards (Weizmann)GPKOW
Ensembl hg19 (Hinxton)ENSG00000068394 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000068394 [Gene_View]  chrX:49113385-49123801 [Contig_View]  GPKOW [Vega]
ICGC DataPortalENSG00000068394
TCGA cBioPortalGPKOW
AceView (NCBI)GPKOW
Genatlas (Paris)GPKOW
WikiGenes27238
SOURCE (Princeton)GPKOW
Genetics Home Reference (NIH)GPKOW
Genomic and cartography
GoldenPath hg38 (UCSC)GPKOW  -     chrX:49113385-49123801 -  Xp11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GPKOW  -     Xp11.23   [Description]    (hg19-Feb_2009)
EnsemblGPKOW - Xp11.23 [CytoView hg19]  GPKOW - Xp11.23 [CytoView hg38]
Mapping of homologs : NCBIGPKOW [Mapview hg19]  GPKOW [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB209806 BC000397 BC003148 BE795098 HQ447945
RefSeq transcript (Entrez)NM_015698
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GPKOW
Cluster EST : UnigeneHs.503666 [ NCBI ]
CGAP (NCI)Hs.503666
Alternative Splicing GalleryENSG00000068394
Gene ExpressionGPKOW [ NCBI-GEO ]   GPKOW [ EBI - ARRAY_EXPRESS ]   GPKOW [ SEEK ]   GPKOW [ MEM ]
Gene Expression Viewer (FireBrowse)GPKOW [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27238
GTEX Portal (Tissue expression)GPKOW
Human Protein AtlasENSG00000068394-GPKOW [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92917   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92917  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92917
Splice isoforms : SwissVarQ92917
PhosPhoSitePlusQ92917
Domaine pattern : Prosite (Expaxy)G_PATCH (PS50174)   
Domains : Interpro (EBI)G_patch_dom    KOW    Spp2/MOS2_G-patch   
Domain families : Pfam (Sanger)G-patch_2 (PF12656)    KOW (PF00467)   
Domain families : Pfam (NCBI)pfam12656    pfam00467   
Domain families : Smart (EMBL)G_patch (SM00443)  KOW (SM00739)  
Conserved Domain (NCBI)GPKOW
DMDM Disease mutations27238
Blocks (Seattle)GPKOW
SuperfamilyQ92917
Human Protein Atlas [tissue]ENSG00000068394-GPKOW [tissue]
Peptide AtlasQ92917
HPRD06737
IPIIPI00024255   IPI00830038   
Protein Interaction databases
DIP (DOE-UCLA)Q92917
IntAct (EBI)Q92917
FunCoupENSG00000068394
BioGRIDGPKOW
STRING (EMBL)GPKOW
ZODIACGPKOW
Ontologies - Pathways
QuickGOQ92917
Ontology : AmiGOmRNA splicing, via spliceosome  molecular_function  nucleic acid binding  protein binding  nucleoplasm  nucleoplasm  biological_process  
Ontology : EGO-EBImRNA splicing, via spliceosome  molecular_function  nucleic acid binding  protein binding  nucleoplasm  nucleoplasm  biological_process  
NDEx NetworkGPKOW
Atlas of Cancer Signalling NetworkGPKOW
Wikipedia pathwaysGPKOW
Orthology - Evolution
OrthoDB27238
GeneTree (enSembl)ENSG00000068394
Phylogenetic Trees/Animal Genes : TreeFamGPKOW
HOVERGENQ92917
HOGENOMQ92917
Homologs : HomoloGeneGPKOW
Homology/Alignments : Family Browser (UCSC)GPKOW
Gene fusions - Rearrangements
Tumor Fusion PortalGPKOW
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGPKOW [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPKOW
dbVarGPKOW
ClinVarGPKOW
1000_GenomesGPKOW 
Exome Variant ServerGPKOW
ExAC (Exome Aggregation Consortium)ENSG00000068394
GNOMAD BrowserENSG00000068394
Genetic variants : HAPMAP27238
Genomic Variants (DGV)GPKOW [DGVbeta]
DECIPHERGPKOW [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGPKOW 
Mutations
ICGC Data PortalGPKOW 
TCGA Data PortalGPKOW 
Broad Tumor PortalGPKOW
OASIS PortalGPKOW [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGPKOW  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGPKOW
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch GPKOW
DgiDB (Drug Gene Interaction Database)GPKOW
DoCM (Curated mutations)GPKOW (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GPKOW (select a term)
intoGenGPKOW
Cancer3DGPKOW(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETGPKOW
MedgenGPKOW
Genetic Testing Registry GPKOW
NextProtQ92917 [Medical]
TSGene27238
GENETestsGPKOW
Target ValidationGPKOW
Huge Navigator GPKOW [HugePedia]
snp3D : Map Gene to Disease27238
BioCentury BCIQGPKOW
ClinGenGPKOW
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27238
Chemical/Pharm GKB GenePA134956055
Clinical trialGPKOW
Miscellaneous
canSAR (ICR)GPKOW (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPKOW
EVEXGPKOW
GoPubMedGPKOW
iHOPGPKOW
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:59:41 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.