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GPN2 (GPN-loop GTPase 2)

Identity

Alias_namesATPBD1B
ATP binding domain 1 family, member B
Alias_symbol (synonym)FLJ10349
Other alias
HGNC (Hugo) GPN2
LocusID (NCBI) 54707
Atlas_Id 63940
Location 1p36.11  [Link to chromosome band 1p36]
Location_base_pair Starts at 26879382 and ends at 26890378 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GPN2   25513
Cards
Entrez_Gene (NCBI)GPN2  54707  GPN-loop GTPase 2
AliasesATPBD1B
GeneCards (Weizmann)GPN2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:26879382-26890378 [Contig_View]  GPN2 [Vega]
TCGA cBioPortalGPN2
AceView (NCBI)GPN2
Genatlas (Paris)GPN2
WikiGenes54707
SOURCE (Princeton)GPN2
Genetics Home Reference (NIH)GPN2
Genomic and cartography
GoldenPath hg38 (UCSC)GPN2  -     chr1:26879382-26890378 -  1p36.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GPN2  -     1p36.11   [Description]    (hg19-Feb_2009)
EnsemblGPN2 - 1p36.11 [CytoView hg19]  GPN2 - 1p36.11 [CytoView hg38]
Mapping of homologs : NCBIGPN2 [Mapview hg19]  GPN2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK001211 AK022535 AY358864 AY364261 BC007815
RefSeq transcript (Entrez)NM_018066
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GPN2
Cluster EST : UnigeneHs.14333 [ NCBI ]
CGAP (NCI)Hs.14333
Gene ExpressionGPN2 [ NCBI-GEO ]   GPN2 [ EBI - ARRAY_EXPRESS ]   GPN2 [ SEEK ]   GPN2 [ MEM ]
Gene Expression Viewer (FireBrowse)GPN2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54707
GTEX Portal (Tissue expression)GPN2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H9Y4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H9Y4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H9Y4
Splice isoforms : SwissVarQ9H9Y4
PhosPhoSitePlusQ9H9Y4
Domains : Interpro (EBI)Gpn    Gpn2    P-loop_NTPase   
Domain families : Pfam (Sanger)ATP_bind_1 (PF03029)   
Domain families : Pfam (NCBI)pfam03029   
Conserved Domain (NCBI)GPN2
DMDM Disease mutations54707
Blocks (Seattle)GPN2
SuperfamilyQ9H9Y4
Peptide AtlasQ9H9Y4
HPRD07665
IPIIPI00551059   IPI00552888   IPI00552458   
Protein Interaction databases
DIP (DOE-UCLA)Q9H9Y4
IntAct (EBI)Q9H9Y4
BioGRIDGPN2
STRING (EMBL)GPN2
ZODIACGPN2
Ontologies - Pathways
QuickGOQ9H9Y4
Ontology : AmiGOmolecular_function  GTPase activity  GTP binding  cellular_component  cytoplasm  biological_process  RNA polymerase II complex import to nucleus  RNA polymerase III complex localization to nucleus  
Ontology : EGO-EBImolecular_function  GTPase activity  GTP binding  cellular_component  cytoplasm  biological_process  RNA polymerase II complex import to nucleus  RNA polymerase III complex localization to nucleus  
NDEx NetworkGPN2
Atlas of Cancer Signalling NetworkGPN2
Wikipedia pathwaysGPN2
Orthology - Evolution
OrthoDB54707
Phylogenetic Trees/Animal Genes : TreeFamGPN2
HOVERGENQ9H9Y4
HOGENOMQ9H9Y4
Homologs : HomoloGeneGPN2
Homology/Alignments : Family Browser (UCSC)GPN2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGPN2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPN2
dbVarGPN2
ClinVarGPN2
1000_GenomesGPN2 
Exome Variant ServerGPN2
ExAC (Exome Aggregation Consortium)GPN2 (select the gene name)
Genetic variants : HAPMAP54707
Genomic Variants (DGV)GPN2 [DGVbeta]
DECIPHERGPN2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGPN2 
Mutations
ICGC Data PortalGPN2 
TCGA Data PortalGPN2 
Broad Tumor PortalGPN2
OASIS PortalGPN2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGPN2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGPN2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GPN2
DgiDB (Drug Gene Interaction Database)GPN2
DoCM (Curated mutations)GPN2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GPN2 (select a term)
intoGenGPN2
Cancer3DGPN2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGPN2
Genetic Testing Registry GPN2
NextProtQ9H9Y4 [Medical]
TSGene54707
GENETestsGPN2
Target ValidationGPN2
Huge Navigator GPN2 [HugePedia]
snp3D : Map Gene to Disease54707
BioCentury BCIQGPN2
ClinGenGPN2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54707
Chemical/Pharm GKB GenePA162390149
Clinical trialGPN2
Miscellaneous
canSAR (ICR)GPN2 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPN2
EVEXGPN2
GoPubMedGPN2
iHOPGPN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:09:42 CEST 2017

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