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GPN3 (GPN-loop GTPase 3)

Identity

Alias_namesATPBD1C
ATP binding domain 1 family
Alias_symbol (synonym)MGC14560
Other alias
HGNC (Hugo) GPN3
LocusID (NCBI) 51184
Atlas_Id 56200
Location 12q24.11  [Link to chromosome band 12q24]
Location_base_pair Starts at 110452486 and ends at 110468721 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CHN1 (2q31.1) / GPN3 (12q24.11)GPN3 (12q24.11) / ARPC3 (12q24.11)GPN3 (12q24.11) / GPN3 (12q24.11)
GPN3 (12q24.11) / SRSF2 (17q25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GPN3   30186
Cards
Entrez_Gene (NCBI)GPN3  51184  GPN-loop GTPase 3
AliasesATPBD1C
GeneCards (Weizmann)GPN3
Ensembl hg19 (Hinxton)ENSG00000111231 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000111231 [Gene_View]  chr12:110452486-110468721 [Contig_View]  GPN3 [Vega]
ICGC DataPortalENSG00000111231
TCGA cBioPortalGPN3
AceView (NCBI)GPN3
Genatlas (Paris)GPN3
WikiGenes51184
SOURCE (Princeton)GPN3
Genetics Home Reference (NIH)GPN3
Genomic and cartography
GoldenPath hg38 (UCSC)GPN3  -     chr12:110452486-110468721 -  12q24.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GPN3  -     12q24.11   [Description]    (hg19-Feb_2009)
EnsemblGPN3 - 12q24.11 [CytoView hg19]  GPN3 - 12q24.11 [CytoView hg38]
Mapping of homologs : NCBIGPN3 [Mapview hg19]  GPN3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF117229 AK223209 AK314946 AM393009 AM393821
RefSeq transcript (Entrez)NM_001164372 NM_001164373 NM_016301
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GPN3
Cluster EST : UnigeneHs.634680 [ NCBI ]
CGAP (NCI)Hs.634680
Alternative Splicing GalleryENSG00000111231
Gene ExpressionGPN3 [ NCBI-GEO ]   GPN3 [ EBI - ARRAY_EXPRESS ]   GPN3 [ SEEK ]   GPN3 [ MEM ]
Gene Expression Viewer (FireBrowse)GPN3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51184
GTEX Portal (Tissue expression)GPN3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UHW5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UHW5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UHW5
Splice isoforms : SwissVarQ9UHW5
PhosPhoSitePlusQ9UHW5
Domains : Interpro (EBI)Gpn    Gpn3    P-loop_NTPase   
Domain families : Pfam (Sanger)ATP_bind_1 (PF03029)   
Domain families : Pfam (NCBI)pfam03029   
Conserved Domain (NCBI)GPN3
DMDM Disease mutations51184
Blocks (Seattle)GPN3
SuperfamilyQ9UHW5
Human Protein AtlasENSG00000111231
Peptide AtlasQ9UHW5
HPRD17498
IPIIPI00470580   IPI00856080   IPI01021512   IPI01021137   IPI01020973   IPI00794828   
Protein Interaction databases
DIP (DOE-UCLA)Q9UHW5
IntAct (EBI)Q9UHW5
FunCoupENSG00000111231
BioGRIDGPN3
STRING (EMBL)GPN3
ZODIACGPN3
Ontologies - Pathways
QuickGOQ9UHW5
Ontology : AmiGOGTPase activity  protein binding  GTP binding  intracellular  protein complex  RNA polymerase II complex import to nucleus  RNA polymerase III complex localization to nucleus  
Ontology : EGO-EBIGTPase activity  protein binding  GTP binding  intracellular  protein complex  RNA polymerase II complex import to nucleus  RNA polymerase III complex localization to nucleus  
NDEx NetworkGPN3
Atlas of Cancer Signalling NetworkGPN3
Wikipedia pathwaysGPN3
Orthology - Evolution
OrthoDB51184
GeneTree (enSembl)ENSG00000111231
Phylogenetic Trees/Animal Genes : TreeFamGPN3
HOVERGENQ9UHW5
HOGENOMQ9UHW5
Homologs : HomoloGeneGPN3
Homology/Alignments : Family Browser (UCSC)GPN3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGPN3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPN3
dbVarGPN3
ClinVarGPN3
1000_GenomesGPN3 
Exome Variant ServerGPN3
ExAC (Exome Aggregation Consortium)GPN3 (select the gene name)
Genetic variants : HAPMAP51184
Genomic Variants (DGV)GPN3 [DGVbeta]
DECIPHERGPN3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGPN3 
Mutations
ICGC Data PortalGPN3 
TCGA Data PortalGPN3 
Broad Tumor PortalGPN3
OASIS PortalGPN3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGPN3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGPN3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GPN3
DgiDB (Drug Gene Interaction Database)GPN3
DoCM (Curated mutations)GPN3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GPN3 (select a term)
intoGenGPN3
Cancer3DGPN3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGPN3
Genetic Testing Registry GPN3
NextProtQ9UHW5 [Medical]
TSGene51184
GENETestsGPN3
Huge Navigator GPN3 [HugePedia]
snp3D : Map Gene to Disease51184
BioCentury BCIQGPN3
ClinGenGPN3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51184
Chemical/Pharm GKB GenePA162390164
Clinical trialGPN3
Miscellaneous
canSAR (ICR)GPN3 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPN3
EVEXGPN3
GoPubMedGPN3
iHOPGPN3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Fri May 19 12:17:46 CEST 2017

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