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GPR107 (G protein-coupled receptor 107)

Identity

Alias_symbol (synonym)KIAA1624
RP11-88G17
FLJ20998
LUSTR1
Other aliasGCDRP
bA138E2.2
HGNC (Hugo) GPR107
LocusID (NCBI) 57720
Atlas_Id 54342
Location 9q34.11  [Link to chromosome band 9q34]
Location_base_pair Starts at 132815985 and ends at 132902448 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
AK8 (9q34.13) / GPR107 (9q34.11)ENSA (1q21.3) / GPR107 (9q34.11)GPR107 (9q34.11) / AAK1 (2p13.3)
GPR107 (9q34.11) / ANXA3 (4q21.21)GPR107 (9q34.11) / ATRAID (2p23.3)GPR107 (9q34.11) / BRAT1 (7p22.3)
GPR107 (9q34.11) / CLIP4 (2p23.2)GPR107 (9q34.11) / GARNL3 (9q33.3)GPR107 (9q34.11) / GPR107 (9q34.11)
GPR107 (9q34.11) / VPS13A (9q21.2)MAPK1 (22q11.21) / GPR107 (9q34.11)NBPF11 (1q21.1) / GPR107 (9q34.11)
GPR107 9q34.11 / GARNL3 9q33.3GPR107 9q34.11 / VPS13A 9q21.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GPR107   17830
Cards
Entrez_Gene (NCBI)GPR107  57720  G protein-coupled receptor 107
AliasesGCDRP; LUSTR1; bA138E2.2
GeneCards (Weizmann)GPR107
Ensembl hg19 (Hinxton)ENSG00000148358 [Gene_View]  chr9:132815985-132902448 [Contig_View]  GPR107 [Vega]
Ensembl hg38 (Hinxton)ENSG00000148358 [Gene_View]  chr9:132815985-132902448 [Contig_View]  GPR107 [Vega]
ICGC DataPortalENSG00000148358
TCGA cBioPortalGPR107
AceView (NCBI)GPR107
Genatlas (Paris)GPR107
WikiGenes57720
SOURCE (Princeton)GPR107
Genetics Home Reference (NIH)GPR107
Genomic and cartography
GoldenPath hg19 (UCSC)GPR107  -     chr9:132815985-132902448 +  9q34.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GPR107  -     9q34.11   [Description]    (hg38-Dec_2013)
EnsemblGPR107 - 9q34.11 [CytoView hg19]  GPR107 - 9q34.11 [CytoView hg38]
Mapping of homologs : NCBIGPR107 [Mapview hg19]  GPR107 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB046844 AF308603 AF376725 AJ420422 AJ420428
RefSeq transcript (Entrez)NM_001136557 NM_001136558 NM_001287346 NM_020960
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)GPR107
Cluster EST : UnigeneHs.512461 [ NCBI ]
CGAP (NCI)Hs.512461
Alternative Splicing GalleryENSG00000148358
Gene ExpressionGPR107 [ NCBI-GEO ]   GPR107 [ EBI - ARRAY_EXPRESS ]   GPR107 [ SEEK ]   GPR107 [ MEM ]
Gene Expression Viewer (FireBrowse)GPR107 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57720
GTEX Portal (Tissue expression)GPR107
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VW38   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VW38  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VW38
Splice isoforms : SwissVarQ5VW38
PhosPhoSitePlusQ5VW38
Domains : Interpro (EBI)GPR107-like   
Domain families : Pfam (Sanger)Lung_7-TM_R (PF06814)   
Domain families : Pfam (NCBI)pfam06814   
Conserved Domain (NCBI)GPR107
DMDM Disease mutations57720
Blocks (Seattle)GPR107
SuperfamilyQ5VW38
Human Protein AtlasENSG00000148358
Peptide AtlasQ5VW38
HPRD17054
IPIIPI00413788   IPI00382815   IPI00184474   IPI00436172   IPI00914870   
Protein Interaction databases
DIP (DOE-UCLA)Q5VW38
IntAct (EBI)Q5VW38
FunCoupENSG00000148358
BioGRIDGPR107
STRING (EMBL)GPR107
ZODIACGPR107
Ontologies - Pathways
QuickGOQ5VW38
Ontology : AmiGOearly endosome  Golgi apparatus  integral component of membrane  clathrin-coated vesicle  clathrin heavy chain binding  clathrin-mediated endocytosis  
Ontology : EGO-EBIearly endosome  Golgi apparatus  integral component of membrane  clathrin-coated vesicle  clathrin heavy chain binding  clathrin-mediated endocytosis  
NDEx NetworkGPR107
Atlas of Cancer Signalling NetworkGPR107
Wikipedia pathwaysGPR107
Orthology - Evolution
OrthoDB57720
GeneTree (enSembl)ENSG00000148358
Phylogenetic Trees/Animal Genes : TreeFamGPR107
HOVERGENQ5VW38
HOGENOMQ5VW38
Homologs : HomoloGeneGPR107
Homology/Alignments : Family Browser (UCSC)GPR107
Gene fusions - Rearrangements
Fusion : MitelmanGPR107/ATRAID [9q34.11/2p23.3]  
Fusion : MitelmanGPR107/GARNL3 [9q34.11/9q33.3]  [t(9;9)(q33;q34)]  
Fusion : MitelmanGPR107/VPS13A [9q34.11/9q21.2]  [t(9;9)(q21;q34)]  
Fusion: TCGAGPR107 9q34.11 GARNL3 9q33.3 PRAD
Fusion: TCGAGPR107 9q34.11 VPS13A 9q21.2 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGPR107 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPR107
dbVarGPR107
ClinVarGPR107
1000_GenomesGPR107 
Exome Variant ServerGPR107
ExAC (Exome Aggregation Consortium)GPR107 (select the gene name)
Genetic variants : HAPMAP57720
Genomic Variants (DGV)GPR107 [DGVbeta]
DECIPHER (Syndromes)9:132815985-132902448  ENSG00000148358
CONAN: Copy Number AnalysisGPR107 
Mutations
ICGC Data PortalGPR107 
TCGA Data PortalGPR107 
Broad Tumor PortalGPR107
OASIS PortalGPR107 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGPR107  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGPR107
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GPR107
DgiDB (Drug Gene Interaction Database)GPR107
DoCM (Curated mutations)GPR107 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GPR107 (select a term)
intoGenGPR107
Cancer3DGPR107(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGPR107
Genetic Testing Registry GPR107
NextProtQ5VW38 [Medical]
TSGene57720
GENETestsGPR107
Huge Navigator GPR107 [HugePedia]
snp3D : Map Gene to Disease57720
BioCentury BCIQGPR107
ClinGenGPR107
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57720
Chemical/Pharm GKB GenePA28854
Clinical trialGPR107
Miscellaneous
canSAR (ICR)GPR107 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPR107
EVEXGPR107
GoPubMedGPR107
iHOPGPR107
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:02:52 CEST 2017

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