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GPR108 (G protein-coupled receptor 108)

Identity

Alias_symbol (synonym)LUSTR2
Other alias
HGNC (Hugo) GPR108
LocusID (NCBI) 56927
Atlas_Id 63944
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 6729925 and ends at 6737633 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FBXO6 (1p36.22) / GPR108 (19p13.3)GPR108 (19p13.3) / GPR108 (19p13.3)GPR108 (19p13.3) / PDE4A (19p13.2)
GPR108 (19p13.3) / RAB5B (12q13.2)PDE4A (19p13.2) / GPR108 (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GPR108   17829
Cards
Entrez_Gene (NCBI)GPR108  56927  G protein-coupled receptor 108
AliasesLUSTR2
GeneCards (Weizmann)GPR108
Ensembl hg19 (Hinxton)ENSG00000125734 [Gene_View]  chr19:6729925-6737633 [Contig_View]  GPR108 [Vega]
Ensembl hg38 (Hinxton)ENSG00000125734 [Gene_View]  chr19:6729925-6737633 [Contig_View]  GPR108 [Vega]
ICGC DataPortalENSG00000125734
TCGA cBioPortalGPR108
AceView (NCBI)GPR108
Genatlas (Paris)GPR108
WikiGenes56927
SOURCE (Princeton)GPR108
Genetics Home Reference (NIH)GPR108
Genomic and cartography
GoldenPath hg19 (UCSC)GPR108  -     chr19:6729925-6737633 -  19p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GPR108  -     19p13.3   [Description]    (hg38-Dec_2013)
EnsemblGPR108 - 19p13.3 [CytoView hg19]  GPR108 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIGPR108 [Mapview hg19]  GPR108 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI740753 AK291968 AL365404 AL522595 AX775899
RefSeq transcript (Entrez)NM_001080452 NM_020171
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_004929412
Consensus coding sequences : CCDS (NCBI)GPR108
Cluster EST : UnigeneHs.167641 [ NCBI ]
CGAP (NCI)Hs.167641
Alternative Splicing GalleryENSG00000125734
Gene ExpressionGPR108 [ NCBI-GEO ]   GPR108 [ EBI - ARRAY_EXPRESS ]   GPR108 [ SEEK ]   GPR108 [ MEM ]
Gene Expression Viewer (FireBrowse)GPR108 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56927
GTEX Portal (Tissue expression)GPR108
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NPR9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NPR9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NPR9
Splice isoforms : SwissVarQ9NPR9
PhosPhoSitePlusQ9NPR9
Domains : Interpro (EBI)TM_rcpt_euk   
Domain families : Pfam (Sanger)Lung_7-TM_R (PF06814)   
Domain families : Pfam (NCBI)pfam06814   
Conserved Domain (NCBI)GPR108
DMDM Disease mutations56927
Blocks (Seattle)GPR108
SuperfamilyQ9NPR9
Human Protein AtlasENSG00000125734
Peptide AtlasQ9NPR9
IPIIPI00299425   IPI00844516   IPI01022758   IPI01022593   IPI01022805   IPI01021361   
Protein Interaction databases
DIP (DOE-UCLA)Q9NPR9
IntAct (EBI)Q9NPR9
FunCoupENSG00000125734
BioGRIDGPR108
STRING (EMBL)GPR108
ZODIACGPR108
Ontologies - Pathways
QuickGOQ9NPR9
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkGPR108
Atlas of Cancer Signalling NetworkGPR108
Wikipedia pathwaysGPR108
Orthology - Evolution
OrthoDB56927
GeneTree (enSembl)ENSG00000125734
Phylogenetic Trees/Animal Genes : TreeFamGPR108
HOVERGENQ9NPR9
HOGENOMQ9NPR9
Homologs : HomoloGeneGPR108
Homology/Alignments : Family Browser (UCSC)GPR108
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGPR108 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPR108
dbVarGPR108
ClinVarGPR108
1000_GenomesGPR108 
Exome Variant ServerGPR108
ExAC (Exome Aggregation Consortium)GPR108 (select the gene name)
Genetic variants : HAPMAP56927
Genomic Variants (DGV)GPR108 [DGVbeta]
DECIPHER (Syndromes)19:6729925-6737633  ENSG00000125734
CONAN: Copy Number AnalysisGPR108 
Mutations
ICGC Data PortalGPR108 
TCGA Data PortalGPR108 
Broad Tumor PortalGPR108
OASIS PortalGPR108 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGPR108  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGPR108
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GPR108
DgiDB (Drug Gene Interaction Database)GPR108
DoCM (Curated mutations)GPR108 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GPR108 (select a term)
intoGenGPR108
Cancer3DGPR108(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGPR108
Genetic Testing Registry GPR108
NextProtQ9NPR9 [Medical]
TSGene56927
GENETestsGPR108
Huge Navigator GPR108 [HugePedia]
snp3D : Map Gene to Disease56927
BioCentury BCIQGPR108
ClinGenGPR108
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56927
Chemical/Pharm GKB GenePA28855
Clinical trialGPR108
Miscellaneous
canSAR (ICR)GPR108 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPR108
EVEXGPR108
GoPubMedGPR108
iHOPGPR108
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:06:37 CET 2017

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