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GPR139 (G protein-coupled receptor 139)

Identity

Alias_symbol (synonym)PGR3
Other aliasGPRg1
HGNC (Hugo) GPR139
LocusID (NCBI) 124274
Atlas_Id 63959
Location 16p12.3  [Link to chromosome band 16p12]
Location_base_pair Starts at 20043043 and ends at 20085100 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GPR139   19995
Cards
Entrez_Gene (NCBI)GPR139  124274  G protein-coupled receptor 139
AliasesGPRg1; PGR3
GeneCards (Weizmann)GPR139
Ensembl hg19 (Hinxton) [Gene_View]  chr16:20043043-20085100 [Contig_View]  GPR139 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:20043043-20085100 [Contig_View]  GPR139 [Vega]
TCGA cBioPortalGPR139
AceView (NCBI)GPR139
Genatlas (Paris)GPR139
WikiGenes124274
SOURCE (Princeton)GPR139
Genetics Home Reference (NIH)GPR139
Genomic and cartography
GoldenPath hg19 (UCSC)GPR139  -     chr16:20043043-20085100 -  16p12.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GPR139  -     16p12.3   [Description]    (hg38-Dec_2013)
EnsemblGPR139 - 16p12.3 [CytoView hg19]  GPR139 - 16p12.3 [CytoView hg38]
Mapping of homologs : NCBIGPR139 [Mapview hg19]  GPR139 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB196529 AK291384 AY255545 AY635179 BC137237
RefSeq transcript (Entrez)NM_001002911
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_187260 NW_004929400
Consensus coding sequences : CCDS (NCBI)GPR139
Cluster EST : UnigeneHs.446875 [ NCBI ]
CGAP (NCI)Hs.446875
Gene ExpressionGPR139 [ NCBI-GEO ]   GPR139 [ EBI - ARRAY_EXPRESS ]   GPR139 [ SEEK ]   GPR139 [ MEM ]
Gene Expression Viewer (FireBrowse)GPR139 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)124274
GTEX Portal (Tissue expression)GPR139
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6DWJ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6DWJ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6DWJ6
Splice isoforms : SwissVarQ6DWJ6
PhosPhoSitePlusQ6DWJ6
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Conserved Domain (NCBI)GPR139
DMDM Disease mutations124274
Blocks (Seattle)GPR139
SuperfamilyQ6DWJ6
Peptide AtlasQ6DWJ6
HPRD17062
IPIIPI00455139   
Protein Interaction databases
DIP (DOE-UCLA)Q6DWJ6
IntAct (EBI)Q6DWJ6
BioGRIDGPR139
STRING (EMBL)GPR139
ZODIACGPR139
Ontologies - Pathways
QuickGOQ6DWJ6
Ontology : AmiGOplasma membrane  G-protein coupled receptor signaling pathway  phospholipase C-activating G-protein coupled receptor signaling pathway  neuropeptide signaling pathway  neuropeptide receptor activity  integral component of membrane  protein dimerization activity  
Ontology : EGO-EBIplasma membrane  G-protein coupled receptor signaling pathway  phospholipase C-activating G-protein coupled receptor signaling pathway  neuropeptide signaling pathway  neuropeptide receptor activity  integral component of membrane  protein dimerization activity  
NDEx NetworkGPR139
Atlas of Cancer Signalling NetworkGPR139
Wikipedia pathwaysGPR139
Orthology - Evolution
OrthoDB124274
Phylogenetic Trees/Animal Genes : TreeFamGPR139
HOVERGENQ6DWJ6
HOGENOMQ6DWJ6
Homologs : HomoloGeneGPR139
Homology/Alignments : Family Browser (UCSC)GPR139
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGPR139 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPR139
dbVarGPR139
ClinVarGPR139
1000_GenomesGPR139 
Exome Variant ServerGPR139
ExAC (Exome Aggregation Consortium)GPR139 (select the gene name)
Genetic variants : HAPMAP124274
Genomic Variants (DGV)GPR139 [DGVbeta]
DECIPHER (Syndromes)16:20043043-20085100  
CONAN: Copy Number AnalysisGPR139 
Mutations
ICGC Data PortalGPR139 
TCGA Data PortalGPR139 
Broad Tumor PortalGPR139
OASIS PortalGPR139 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGPR139  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGPR139
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GPR139
DgiDB (Drug Gene Interaction Database)GPR139
DoCM (Curated mutations)GPR139 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GPR139 (select a term)
intoGenGPR139
Cancer3DGPR139(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGPR139
Genetic Testing Registry GPR139
NextProtQ6DWJ6 [Medical]
TSGene124274
GENETestsGPR139
Huge Navigator GPR139 [HugePedia]
snp3D : Map Gene to Disease124274
BioCentury BCIQGPR139
ClinGenGPR139
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD124274
Chemical/Pharm GKB GenePA134970866
Clinical trialGPR139
Miscellaneous
canSAR (ICR)GPR139 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPR139
EVEXGPR139
GoPubMedGPR139
iHOPGPR139
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:06:38 CET 2017

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