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GPR142 (G protein-coupled receptor 142)

Identity

Alias_symbol (synonym)PGR2
Other alias
HGNC (Hugo) GPR142
LocusID (NCBI) 350383
Atlas_Id 63961
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 72363645 and ends at 72368739 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GPR142   20088
Cards
Entrez_Gene (NCBI)GPR142  350383  G protein-coupled receptor 142
AliasesPGR2
GeneCards (Weizmann)GPR142
Ensembl hg19 (Hinxton)ENSG00000257008 [Gene_View]  chr17:72363645-72368739 [Contig_View]  GPR142 [Vega]
Ensembl hg38 (Hinxton)ENSG00000257008 [Gene_View]  chr17:72363645-72368739 [Contig_View]  GPR142 [Vega]
ICGC DataPortalENSG00000257008
TCGA cBioPortalGPR142
AceView (NCBI)GPR142
Genatlas (Paris)GPR142
WikiGenes350383
SOURCE (Princeton)GPR142
Genetics Home Reference (NIH)GPR142
Genomic and cartography
GoldenPath hg19 (UCSC)GPR142  -     chr17:72363645-72368739 +  17q25.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GPR142  -     17q25.1   [Description]    (hg38-Dec_2013)
EnsemblGPR142 - 17q25.1 [CytoView hg19]  GPR142 - 17q25.1 [CytoView hg38]
Mapping of homologs : NCBIGPR142 [Mapview hg19]  GPR142 [Mapview hg38]
OMIM609046   
Gene and transcription
Genbank (Entrez)AB196530 AY255622 AY288421 BC143807 BC152734
RefSeq transcript (Entrez)NM_181790
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)GPR142
Cluster EST : UnigeneHs.574368 [ NCBI ]
CGAP (NCI)Hs.574368
Alternative Splicing GalleryENSG00000257008
Gene ExpressionGPR142 [ NCBI-GEO ]   GPR142 [ EBI - ARRAY_EXPRESS ]   GPR142 [ SEEK ]   GPR142 [ MEM ]
Gene Expression Viewer (FireBrowse)GPR142 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)350383
GTEX Portal (Tissue expression)GPR142
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z601   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z601  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z601
Splice isoforms : SwissVarQ7Z601
PhosPhoSitePlusQ7Z601
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Conserved Domain (NCBI)GPR142
DMDM Disease mutations350383
Blocks (Seattle)GPR142
SuperfamilyQ7Z601
Human Protein AtlasENSG00000257008
Peptide AtlasQ7Z601
HPRD16424
IPIIPI00376210   IPI01014807   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z601
IntAct (EBI)Q7Z601
FunCoupENSG00000257008
BioGRIDGPR142
STRING (EMBL)GPR142
ZODIACGPR142
Ontologies - Pathways
QuickGOQ7Z601
Ontology : AmiGOG-protein coupled receptor activity  cytoplasm  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  cell junction  
Ontology : EGO-EBIG-protein coupled receptor activity  cytoplasm  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  cell junction  
NDEx NetworkGPR142
Atlas of Cancer Signalling NetworkGPR142
Wikipedia pathwaysGPR142
Orthology - Evolution
OrthoDB350383
GeneTree (enSembl)ENSG00000257008
Phylogenetic Trees/Animal Genes : TreeFamGPR142
HOVERGENQ7Z601
HOGENOMQ7Z601
Homologs : HomoloGeneGPR142
Homology/Alignments : Family Browser (UCSC)GPR142
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGPR142 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPR142
dbVarGPR142
ClinVarGPR142
1000_GenomesGPR142 
Exome Variant ServerGPR142
ExAC (Exome Aggregation Consortium)GPR142 (select the gene name)
Genetic variants : HAPMAP350383
Genomic Variants (DGV)GPR142 [DGVbeta]
DECIPHER (Syndromes)17:72363645-72368739  ENSG00000257008
CONAN: Copy Number AnalysisGPR142 
Mutations
ICGC Data PortalGPR142 
TCGA Data PortalGPR142 
Broad Tumor PortalGPR142
OASIS PortalGPR142 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGPR142  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGPR142
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GPR142
DgiDB (Drug Gene Interaction Database)GPR142
DoCM (Curated mutations)GPR142 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GPR142 (select a term)
intoGenGPR142
Cancer3DGPR142(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609046   
Orphanet
MedgenGPR142
Genetic Testing Registry GPR142
NextProtQ7Z601 [Medical]
TSGene350383
GENETestsGPR142
Huge Navigator GPR142 [HugePedia]
snp3D : Map Gene to Disease350383
BioCentury BCIQGPR142
ClinGenGPR142
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD350383
Chemical/Pharm GKB GenePA134891802
Clinical trialGPR142
Miscellaneous
canSAR (ICR)GPR142 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPR142
EVEXGPR142
GoPubMedGPR142
iHOPGPR142
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:06:39 CET 2017

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