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GPR143 (G protein-coupled receptor 143)

Identity

Other namesNYS6
OA1
HGNC (Hugo) GPR143
LocusID (NCBI) 4935
Atlas_Id 45630
Location Xp22.2
Location_base_pair Starts at 9693453 and ends at 9734005 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
IFT27 (22q12.3) / GPR143 (Xp22.2)LOC100507412 (-) / GPR143 (Xp22.2)TBL1X (Xp22.31) / GPR143 (Xp22.2)
TBL1X Xp22.31 / GPR143 Xp22.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GPR143   20145
Cards
Entrez_Gene (NCBI)GPR143  4935  G protein-coupled receptor 143
GeneCards (Weizmann)GPR143
Ensembl hg19 (Hinxton)ENSG00000101850 [Gene_View]  chrX:9693453-9734005 [Contig_View]  GPR143 [Vega]
Ensembl hg38 (Hinxton)ENSG00000101850 [Gene_View]  chrX:9693453-9734005 [Contig_View]  GPR143 [Vega]
ICGC DataPortalENSG00000101850
TCGA cBioPortalGPR143
AceView (NCBI)GPR143
Genatlas (Paris)GPR143
WikiGenes4935
SOURCE (Princeton)GPR143
Genomic and cartography
GoldenPath hg19 (UCSC)GPR143  -     chrX:9693453-9734005 -  Xp22.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GPR143  -     Xp22.2   [Description]    (hg38-Dec_2013)
EnsemblGPR143 - Xp22.2 [CytoView hg19]  GPR143 - Xp22.2 [CytoView hg38]
Mapping of homologs : NCBIGPR143 [Mapview hg19]  GPR143 [Mapview hg38]
OMIM300500   300808   300814   
Gene and transcription
Genbank (Entrez)BC015657 BC068977 BU188283 Z48804
RefSeq transcript (Entrez)NM_000273
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_009074 NT_167197 NW_004929438
Consensus coding sequences : CCDS (NCBI)GPR143
Cluster EST : UnigeneHs.74124 [ NCBI ]
CGAP (NCI)Hs.74124
Alternative Splicing GalleryENSG00000101850
Gene ExpressionGPR143 [ NCBI-GEO ]   GPR143 [ EBI - ARRAY_EXPRESS ]   GPR143 [ SEEK ]   GPR143 [ MEM ]
Gene Expression Viewer (FireBrowse)GPR143 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4935
GTEX Portal (Tissue expression)GPR143
Protein : pattern, domain, 3D structure
UniProt/SwissProtP51810 (Uniprot)
NextProtP51810  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP51810
Splice isoforms : SwissVarP51810 (Swissvar)
PhosPhoSitePlusP51810
Domains : Interpro (EBI)GPR143   
Domain families : Pfam (Sanger)Ocular_alb (PF02101)   
Domain families : Pfam (NCBI)pfam02101   
DMDM Disease mutations4935
Blocks (Seattle)GPR143
SuperfamilyP51810
Human Protein AtlasENSG00000101850
Peptide AtlasP51810
HPRD02355
IPIIPI00218565   IPI00646724   IPI00643895   
Protein Interaction databases
DIP (DOE-UCLA)P51810
IntAct (EBI)P51810
FunCoupENSG00000101850
BioGRIDGPR143
STRING (EMBL)GPR143
ZODIACGPR143
Ontologies - Pathways
QuickGOP51810
Ontology : AmiGOG-protein coupled receptor activity  protein binding  cytoplasm  lysosomal membrane  Golgi apparatus  plasma membrane  plasma membrane  eye pigment biosynthetic process  signal transduction  G-protein coupled receptor signaling pathway  G-protein coupled receptor signaling pathway  neuropeptide signaling pathway  visual perception  membrane  integral component of membrane  apical plasma membrane  melanosome localization  melanosome transport  melanosome organization  melanosome membrane  dopamine binding  calcium-mediated signaling using intracellular calcium source  L-DOPA receptor activity  melanosome  phosphatidylinositol-mediated signaling  regulation of calcium-mediated signaling  L-DOPA binding  tyrosine binding  regulation of melanosome transport  regulation of melanosome organization  
Ontology : EGO-EBIG-protein coupled receptor activity  protein binding  cytoplasm  lysosomal membrane  Golgi apparatus  plasma membrane  plasma membrane  eye pigment biosynthetic process  signal transduction  G-protein coupled receptor signaling pathway  G-protein coupled receptor signaling pathway  neuropeptide signaling pathway  visual perception  membrane  integral component of membrane  apical plasma membrane  melanosome localization  melanosome transport  melanosome organization  melanosome membrane  dopamine binding  calcium-mediated signaling using intracellular calcium source  L-DOPA receptor activity  melanosome  phosphatidylinositol-mediated signaling  regulation of calcium-mediated signaling  L-DOPA binding  tyrosine binding  regulation of melanosome transport  regulation of melanosome organization  
NDEx Network
Atlas of Cancer Signalling NetworkGPR143
Wikipedia pathwaysGPR143
Orthology - Evolution
OrthoDB4935
GeneTree (enSembl)ENSG00000101850
Phylogenetic Trees/Animal Genes : TreeFamGPR143
Homologs : HomoloGeneGPR143
Homology/Alignments : Family Browser (UCSC)GPR143
Gene fusions - Rearrangements
Fusion: TCGATBL1X Xp22.31 GPR143 Xp22.2 BLCA
Polymorphisms : SNP, variants
NCBI Variation ViewerGPR143 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPR143
dbVarGPR143
ClinVarGPR143
1000_GenomesGPR143 
Exome Variant ServerGPR143
ExAC (Exome Aggregation Consortium)GPR143 (select the gene name)
Genetic variants : HAPMAP4935
Genomic Variants (DGV)GPR143 [DGVbeta]
Mutations
ICGC Data PortalGPR143 
TCGA Data PortalGPR143 
Broad Tumor PortalGPR143
OASIS PortalGPR143 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGPR143 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GPR143
DgiDB (Drug Gene Interaction Database)GPR143
DoCM (Curated mutations)GPR143 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GPR143 (select a term)
intoGenGPR143
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)X:9693453-9734005  ENSG00000101850
CONAN: Copy Number AnalysisGPR143 
Mutations and Diseases : HGMDGPR143
OMIM300500    300808    300814   
MedgenGPR143
Genetic Testing Registry GPR143
NextProtP51810 [Medical]
TSGene4935
GENETestsGPR143
Huge Navigator GPR143 [HugePedia]
snp3D : Map Gene to Disease4935
BioCentury BCIQGPR143
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4935
Chemical/Pharm GKB GenePA31872
Clinical trialGPR143
Miscellaneous
canSAR (ICR)GPR143 (select the gene name)
Probes
Litterature
PubMed47 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPR143
EVEXGPR143
GoPubMedGPR143
iHOPGPR143
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun May 8 18:48:08 CEST 2016

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