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GPR160 (G protein-coupled receptor 160)

Identity

Alias_symbol (synonym)GPCR150
GPCR1
Other alias
HGNC (Hugo) GPR160
LocusID (NCBI) 26996
Atlas_Id 54345
Location 3q26.2  [Link to chromosome band 3q26]
Location_base_pair Starts at 170037947 and ends at 170085395 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GPR160 (3q26.2) / NCEH1 (3q26.31)GPR160 (3q26.2) / PDCD10 (3q26.1)GPR160 (3q26.2) / PRKCI (3q26.2)
SKIL (3q26.2) / GPR160 (3q26.2)SRC (20q11.23) / GPR160 (3q26.2)GPR160 3q26.2 / PDCD10 3q26.1
SKIL 3q26.2 / GPR160 3q26.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Small Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)GPR160   23693
Cards
Entrez_Gene (NCBI)GPR160  26996  G protein-coupled receptor 160
AliasesGPCR1; GPCR150
GeneCards (Weizmann)GPR160
Ensembl hg19 (Hinxton)ENSG00000173890 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173890 [Gene_View]  chr3:170037947-170085395 [Contig_View]  GPR160 [Vega]
ICGC DataPortalENSG00000173890
TCGA cBioPortalGPR160
AceView (NCBI)GPR160
Genatlas (Paris)GPR160
WikiGenes26996
SOURCE (Princeton)GPR160
Genetics Home Reference (NIH)GPR160
Genomic and cartography
GoldenPath hg38 (UCSC)GPR160  -     chr3:170037947-170085395 +  3q26.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GPR160  -     3q26.2   [Description]    (hg19-Feb_2009)
EnsemblGPR160 - 3q26.2 [CytoView hg19]  GPR160 - 3q26.2 [CytoView hg38]
Mapping of homologs : NCBIGPR160 [Mapview hg19]  GPR160 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI560646 AJ249248 AK311293 BC000181 BX366931
RefSeq transcript (Entrez)NM_014373
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GPR160
Cluster EST : UnigeneHs.231320 [ NCBI ]
CGAP (NCI)Hs.231320
Alternative Splicing GalleryENSG00000173890
Gene ExpressionGPR160 [ NCBI-GEO ]   GPR160 [ EBI - ARRAY_EXPRESS ]   GPR160 [ SEEK ]   GPR160 [ MEM ]
Gene Expression Viewer (FireBrowse)GPR160 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26996
GTEX Portal (Tissue expression)GPR160
Human Protein AtlasENSG00000173890-GPR160 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UJ42   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UJ42  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UJ42
Splice isoforms : SwissVarQ9UJ42
PhosPhoSitePlusQ9UJ42
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn_7TM   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GPR160
DMDM Disease mutations26996
Blocks (Seattle)GPR160
SuperfamilyQ9UJ42
Human Protein Atlas [tissue]ENSG00000173890-GPR160 [tissue]
Peptide AtlasQ9UJ42
HPRD17069
IPIIPI00003898   IPI00795674   IPI00796224   IPI00798009   IPI00982873   
Protein Interaction databases
DIP (DOE-UCLA)Q9UJ42
IntAct (EBI)Q9UJ42
FunCoupENSG00000173890
BioGRIDGPR160
STRING (EMBL)GPR160
ZODIACGPR160
Ontologies - Pathways
QuickGOQ9UJ42
Ontology : AmiGOG-protein coupled receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  receptor complex  
Ontology : EGO-EBIG-protein coupled receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  receptor complex  
NDEx NetworkGPR160
Atlas of Cancer Signalling NetworkGPR160
Wikipedia pathwaysGPR160
Orthology - Evolution
OrthoDB26996
GeneTree (enSembl)ENSG00000173890
Phylogenetic Trees/Animal Genes : TreeFamGPR160
HOVERGENQ9UJ42
HOGENOMQ9UJ42
Homologs : HomoloGeneGPR160
Homology/Alignments : Family Browser (UCSC)GPR160
Gene fusions - Rearrangements
Fusion : MitelmanGPR160/NCEH1 [3q26.2/3q26.31]  
Fusion : MitelmanGPR160/PDCD10 [3q26.2/3q26.1]  [t(3;3)(q26;q26)]  
Fusion : MitelmanGPR160/PRKCI [3q26.2/3q26.2]  [t(3;3)(q26;q26)]  
Fusion : MitelmanSKIL/GPR160 [3q26.2/3q26.2]  [t(3;3)(q26;q26)]  
Fusion: TCGAGPR160 3q26.2 PDCD10 3q26.1 PRAD
Fusion: TCGASKIL 3q26.2 GPR160 3q26.2 BRCA
Fusion: Tumor Portal GPR160
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGPR160 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPR160
dbVarGPR160
ClinVarGPR160
1000_GenomesGPR160 
Exome Variant ServerGPR160
ExAC (Exome Aggregation Consortium)ENSG00000173890
GNOMAD BrowserENSG00000173890
Genetic variants : HAPMAP26996
Genomic Variants (DGV)GPR160 [DGVbeta]
DECIPHERGPR160 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGPR160 
Mutations
ICGC Data PortalGPR160 
TCGA Data PortalGPR160 
Broad Tumor PortalGPR160
OASIS PortalGPR160 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGPR160  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGPR160
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GPR160
DgiDB (Drug Gene Interaction Database)GPR160
DoCM (Curated mutations)GPR160 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GPR160 (select a term)
intoGenGPR160
Cancer3DGPR160(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGPR160
Genetic Testing Registry GPR160
NextProtQ9UJ42 [Medical]
TSGene26996
GENETestsGPR160
Target ValidationGPR160
Huge Navigator GPR160 [HugePedia]
snp3D : Map Gene to Disease26996
BioCentury BCIQGPR160
ClinGenGPR160
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26996
Chemical/Pharm GKB GenePA134936972
Clinical trialGPR160
Miscellaneous
canSAR (ICR)GPR160 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPR160
EVEXGPR160
GoPubMedGPR160
iHOPGPR160
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:51:49 CET 2017

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