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GPR162 (G protein-coupled receptor 162)

Identity

Alias_symbol (synonym)A-2
GRCA
Other alias
HGNC (Hugo) GPR162
LocusID (NCBI) 27239
Atlas_Id 63975
Location 12p13.31  [Link to chromosome band 12p13]
Location_base_pair Starts at 6821797 and ends at 6827418 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ROBO1 (3p12.3) / GPR162 (12p13.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GPR162   16693
Cards
Entrez_Gene (NCBI)GPR162  27239  G protein-coupled receptor 162
AliasesA-2; GRCA
GeneCards (Weizmann)GPR162
Ensembl hg19 (Hinxton)ENSG00000250510 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000250510 [Gene_View]  chr12:6821797-6827418 [Contig_View]  GPR162 [Vega]
ICGC DataPortalENSG00000250510
TCGA cBioPortalGPR162
AceView (NCBI)GPR162
Genatlas (Paris)GPR162
WikiGenes27239
SOURCE (Princeton)GPR162
Genetics Home Reference (NIH)GPR162
Genomic and cartography
GoldenPath hg38 (UCSC)GPR162  -     chr12:6821797-6827418 +  12p13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GPR162  -     12p13.31   [Description]    (hg19-Feb_2009)
EnsemblGPR162 - 12p13.31 [CytoView hg19]  GPR162 - 12p13.31 [CytoView hg38]
Mapping of homologs : NCBIGPR162 [Mapview hg19]  GPR162 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB209836 AK296359 AK315938 AK316512 BC002353
RefSeq transcript (Entrez)NM_014449 NM_019858
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GPR162
Cluster EST : UnigeneHs.631654 [ NCBI ]
CGAP (NCI)Hs.631654
Alternative Splicing GalleryENSG00000250510
Gene ExpressionGPR162 [ NCBI-GEO ]   GPR162 [ EBI - ARRAY_EXPRESS ]   GPR162 [ SEEK ]   GPR162 [ MEM ]
Gene Expression Viewer (FireBrowse)GPR162 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27239
GTEX Portal (Tissue expression)GPR162
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16538   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ16538  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ16538
Splice isoforms : SwissVarQ16538
PhosPhoSitePlusQ16538
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GCR_153/162    GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    GPR162   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Conserved Domain (NCBI)GPR162
DMDM Disease mutations27239
Blocks (Seattle)GPR162
SuperfamilyQ16538
Human Protein AtlasENSG00000250510
Peptide AtlasQ16538
HPRD13608
IPIIPI00022919   IPI00004405   IPI00029418   IPI01010884   
Protein Interaction databases
DIP (DOE-UCLA)Q16538
IntAct (EBI)Q16538
FunCoupENSG00000250510
BioGRIDGPR162
STRING (EMBL)GPR162
ZODIACGPR162
Ontologies - Pathways
QuickGOQ16538
Ontology : AmiGOG-protein coupled receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  
Ontology : EGO-EBIG-protein coupled receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  
NDEx NetworkGPR162
Atlas of Cancer Signalling NetworkGPR162
Wikipedia pathwaysGPR162
Orthology - Evolution
OrthoDB27239
GeneTree (enSembl)ENSG00000250510
Phylogenetic Trees/Animal Genes : TreeFamGPR162
HOVERGENQ16538
HOGENOMQ16538
Homologs : HomoloGeneGPR162
Homology/Alignments : Family Browser (UCSC)GPR162
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGPR162 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPR162
dbVarGPR162
ClinVarGPR162
1000_GenomesGPR162 
Exome Variant ServerGPR162
ExAC (Exome Aggregation Consortium)GPR162 (select the gene name)
Genetic variants : HAPMAP27239
Genomic Variants (DGV)GPR162 [DGVbeta]
DECIPHERGPR162 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGPR162 
Mutations
ICGC Data PortalGPR162 
TCGA Data PortalGPR162 
Broad Tumor PortalGPR162
OASIS PortalGPR162 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGPR162  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGPR162
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GPR162
DgiDB (Drug Gene Interaction Database)GPR162
DoCM (Curated mutations)GPR162 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GPR162 (select a term)
intoGenGPR162
Cancer3DGPR162(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGPR162
Genetic Testing Registry GPR162
NextProtQ16538 [Medical]
TSGene27239
GENETestsGPR162
Target ValidationGPR162
Huge Navigator GPR162 [HugePedia]
snp3D : Map Gene to Disease27239
BioCentury BCIQGPR162
ClinGenGPR162
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27239
Chemical/Pharm GKB GenePA142671713
Clinical trialGPR162
Miscellaneous
canSAR (ICR)GPR162 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPR162
EVEXGPR162
GoPubMedGPR162
iHOPGPR162
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:51:13 CEST 2017

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