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GPR17 (G protein-coupled receptor 17)

Identity

Other alias-
HGNC (Hugo) GPR17
LocusID (NCBI) 2840
Atlas_Id 53846
Location 2q14.3  [Link to chromosome band 2q14]
Location_base_pair Starts at 127645864 and ends at 127652639 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GPR17   4471
Cards
Entrez_Gene (NCBI)GPR17  2840  G protein-coupled receptor 17
Aliases
GeneCards (Weizmann)GPR17
Ensembl hg19 (Hinxton)ENSG00000144230 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000144230 [Gene_View]  chr2:127645864-127652639 [Contig_View]  GPR17 [Vega]
ICGC DataPortalENSG00000144230
TCGA cBioPortalGPR17
AceView (NCBI)GPR17
Genatlas (Paris)GPR17
WikiGenes2840
SOURCE (Princeton)GPR17
Genetics Home Reference (NIH)GPR17
Genomic and cartography
GoldenPath hg38 (UCSC)GPR17  -     chr2:127645864-127652639 +  2q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GPR17  -     2q14.3   [Description]    (hg19-Feb_2009)
EnsemblGPR17 - 2q14.3 [CytoView hg19]  GPR17 - 2q14.3 [CytoView hg38]
Mapping of homologs : NCBIGPR17 [Mapview hg19]  GPR17 [Mapview hg38]
OMIM603071   
Gene and transcription
Genbank (Entrez)AK126849 AK292725 AK313949 BC013202 BC031653
RefSeq transcript (Entrez)NM_001161415 NM_001161416 NM_001161417 NM_005291
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GPR17
Cluster EST : UnigeneHs.736277 [ NCBI ]
CGAP (NCI)Hs.736277
Alternative Splicing GalleryENSG00000144230
Gene ExpressionGPR17 [ NCBI-GEO ]   GPR17 [ EBI - ARRAY_EXPRESS ]   GPR17 [ SEEK ]   GPR17 [ MEM ]
Gene Expression Viewer (FireBrowse)GPR17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2840
GTEX Portal (Tissue expression)GPR17
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13304   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13304  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13304
Splice isoforms : SwissVarQ13304
PhosPhoSitePlusQ13304
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Conserved Domain (NCBI)GPR17
DMDM Disease mutations2840
Blocks (Seattle)GPR17
SuperfamilyQ13304
Human Protein AtlasENSG00000144230
Peptide AtlasQ13304
HPRD04351
IPIIPI00012717   IPI00218454   IPI00384943   IPI00917542   
Protein Interaction databases
DIP (DOE-UCLA)Q13304
IntAct (EBI)Q13304
FunCoupENSG00000144230
BioGRIDGPR17
STRING (EMBL)GPR17
ZODIACGPR17
Ontologies - Pathways
QuickGOQ13304
Ontology : AmiGOimmune system process  negative regulation of inflammatory response to antigenic stimulus  chemokine receptor activity  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  positive regulation of Rho protein signal transduction  positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G-protein coupled signaling pathway  chemokine-mediated signaling pathway  
Ontology : EGO-EBIimmune system process  negative regulation of inflammatory response to antigenic stimulus  chemokine receptor activity  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  positive regulation of Rho protein signal transduction  positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G-protein coupled signaling pathway  chemokine-mediated signaling pathway  
NDEx NetworkGPR17
Atlas of Cancer Signalling NetworkGPR17
Wikipedia pathwaysGPR17
Orthology - Evolution
OrthoDB2840
GeneTree (enSembl)ENSG00000144230
Phylogenetic Trees/Animal Genes : TreeFamGPR17
HOVERGENQ13304
HOGENOMQ13304
Homologs : HomoloGeneGPR17
Homology/Alignments : Family Browser (UCSC)GPR17
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGPR17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPR17
dbVarGPR17
ClinVarGPR17
1000_GenomesGPR17 
Exome Variant ServerGPR17
ExAC (Exome Aggregation Consortium)GPR17 (select the gene name)
Genetic variants : HAPMAP2840
Genomic Variants (DGV)GPR17 [DGVbeta]
DECIPHERGPR17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGPR17 
Mutations
ICGC Data PortalGPR17 
TCGA Data PortalGPR17 
Broad Tumor PortalGPR17
OASIS PortalGPR17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGPR17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGPR17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GPR17
DgiDB (Drug Gene Interaction Database)GPR17
DoCM (Curated mutations)GPR17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GPR17 (select a term)
intoGenGPR17
Cancer3DGPR17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603071   
Orphanet
MedgenGPR17
Genetic Testing Registry GPR17
NextProtQ13304 [Medical]
TSGene2840
GENETestsGPR17
Target ValidationGPR17
Huge Navigator GPR17 [HugePedia]
snp3D : Map Gene to Disease2840
BioCentury BCIQGPR17
ClinGenGPR17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2840
Chemical/Pharm GKB GenePA28859
Clinical trialGPR17
Miscellaneous
canSAR (ICR)GPR17 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPR17
EVEXGPR17
GoPubMedGPR17
iHOPGPR17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:02:23 CEST 2017

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