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GPR171 (G protein-coupled receptor 171)

Identity

Other aliasH963
HGNC (Hugo) GPR171
LocusID (NCBI) 29909
Atlas_Id 56710
Location 3q25.1  [Link to chromosome band 3q25]
Location_base_pair Starts at 151197832 and ends at 151203201 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GPR171   30057
Cards
Entrez_Gene (NCBI)GPR171  29909  G protein-coupled receptor 171
AliasesH963
GeneCards (Weizmann)GPR171
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr3:151197832-151203201 [Contig_View]  GPR171 [Vega]
TCGA cBioPortalGPR171
AceView (NCBI)GPR171
Genatlas (Paris)GPR171
WikiGenes29909
SOURCE (Princeton)GPR171
Genetics Home Reference (NIH)GPR171
Genomic and cartography
GoldenPath hg38 (UCSC)GPR171  -     chr3:151197832-151203201 -  3q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GPR171  -     3q25.1   [Description]    (hg19-Feb_2009)
EnsemblGPR171 - 3q25.1 [CytoView hg19]  GPR171 - 3q25.1 [CytoView hg38]
Mapping of homologs : NCBIGPR171 [Mapview hg19]  GPR171 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA353758 AF002986 BC036815 DQ890941 DQ894101
RefSeq transcript (Entrez)NM_013308
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GPR171
Cluster EST : UnigeneHs.549152 [ NCBI ]
CGAP (NCI)Hs.549152
Gene ExpressionGPR171 [ NCBI-GEO ]   GPR171 [ EBI - ARRAY_EXPRESS ]   GPR171 [ SEEK ]   GPR171 [ MEM ]
Gene Expression Viewer (FireBrowse)GPR171 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29909
GTEX Portal (Tissue expression)GPR171
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14626   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14626  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14626
Splice isoforms : SwissVarO14626
PhosPhoSitePlusO14626
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Conserved Domain (NCBI)GPR171
DMDM Disease mutations29909
Blocks (Seattle)GPR171
SuperfamilyO14626
Peptide AtlasO14626
IPIIPI00023057   IPI00795835   
Protein Interaction databases
DIP (DOE-UCLA)O14626
IntAct (EBI)O14626
BioGRIDGPR171
STRING (EMBL)GPR171
ZODIACGPR171
Ontologies - Pathways
QuickGOO14626
Ontology : AmiGOG-protein coupled receptor activity  integral component of plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  G-protein coupled purinergic nucleotide receptor signaling pathway  G-protein coupled purinergic nucleotide receptor activity  negative regulation of myeloid cell differentiation  
Ontology : EGO-EBIG-protein coupled receptor activity  integral component of plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  G-protein coupled purinergic nucleotide receptor signaling pathway  G-protein coupled purinergic nucleotide receptor activity  negative regulation of myeloid cell differentiation  
NDEx NetworkGPR171
Atlas of Cancer Signalling NetworkGPR171
Wikipedia pathwaysGPR171
Orthology - Evolution
OrthoDB29909
Phylogenetic Trees/Animal Genes : TreeFamGPR171
HOVERGENO14626
HOGENOMO14626
Homologs : HomoloGeneGPR171
Homology/Alignments : Family Browser (UCSC)GPR171
Gene fusions - Rearrangements
Tumor Fusion PortalGPR171
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGPR171 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPR171
dbVarGPR171
ClinVarGPR171
1000_GenomesGPR171 
Exome Variant ServerGPR171
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP29909
Genomic Variants (DGV)GPR171 [DGVbeta]
DECIPHERGPR171 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGPR171 
Mutations
ICGC Data PortalGPR171 
TCGA Data PortalGPR171 
Broad Tumor PortalGPR171
OASIS PortalGPR171 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGPR171  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGPR171
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GPR171
DgiDB (Drug Gene Interaction Database)GPR171
DoCM (Curated mutations)GPR171 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GPR171 (select a term)
intoGenGPR171
Cancer3DGPR171(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETGPR171
MedgenGPR171
Genetic Testing Registry GPR171
NextProtO14626 [Medical]
TSGene29909
GENETestsGPR171
Target ValidationGPR171
Huge Navigator GPR171 [HugePedia]
snp3D : Map Gene to Disease29909
BioCentury BCIQGPR171
ClinGenGPR171
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29909
Chemical/Pharm GKB GenePA134948560
Clinical trialGPR171
Miscellaneous
canSAR (ICR)GPR171 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPR171
EVEXGPR171
GoPubMedGPR171
iHOPGPR171
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:15:10 CET 2017

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