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GPR179 (G protein-coupled receptor 179)

Identity

Alias_namesGPR158L1
GPR158-like 1
GPR179
Alias_symbol (synonym)CSNB1E
Other aliasGPR158L
HGNC (Hugo) GPR179
LocusID (NCBI) 440435
Atlas_Id 63980
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 38325610 and ends at 38343810 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GPR179   31371
Cards
Entrez_Gene (NCBI)GPR179  440435  G protein-coupled receptor 179
AliasesCSNB1E; GPR158L; GPR158L1
GeneCards (Weizmann)GPR179
Ensembl hg19 (Hinxton)ENSG00000277399 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000277399 [Gene_View]  chr17:38325610-38343810 [Contig_View]  GPR179 [Vega]
ICGC DataPortalENSG00000277399
TCGA cBioPortalGPR179
AceView (NCBI)GPR179
Genatlas (Paris)GPR179
WikiGenes440435
SOURCE (Princeton)GPR179
Genetics Home Reference (NIH)GPR179
Genomic and cartography
GoldenPath hg38 (UCSC)GPR179  -     chr17:38325610-38343810 -  17q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GPR179  -     17q12   [Description]    (hg19-Feb_2009)
EnsemblGPR179 - 17q12 [CytoView hg19]  GPR179 - 17q12 [CytoView hg38]
Mapping of homologs : NCBIGPR179 [Mapview hg19]  GPR179 [Mapview hg38]
OMIM614515   614565   
Gene and transcription
Genbank (Entrez)AY584611 BC172753
RefSeq transcript (Entrez)NM_001004334
RefSeq genomic (Entrez)NC_000017 NC_018928 NG_032655 NT_187614
Consensus coding sequences : CCDS (NCBI)GPR179
Cluster EST : UnigeneHs.462915 [ NCBI ]
CGAP (NCI)Hs.462915
Alternative Splicing GalleryENSG00000277399
Gene ExpressionGPR179 [ NCBI-GEO ]   GPR179 [ EBI - ARRAY_EXPRESS ]   GPR179 [ SEEK ]   GPR179 [ MEM ]
Gene Expression Viewer (FireBrowse)GPR179 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440435
GTEX Portal (Tissue expression)GPR179
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PRD1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PRD1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PRD1
Splice isoforms : SwissVarQ6PRD1
PhosPhoSitePlusQ6PRD1
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F3_4 (PS50259)   
Domains : Interpro (EBI)GPCR_3_C    GPR179   
Domain families : Pfam (Sanger)7tm_3 (PF00003)   
Domain families : Pfam (NCBI)pfam00003   
Conserved Domain (NCBI)GPR179
DMDM Disease mutations440435
Blocks (Seattle)GPR179
SuperfamilyQ6PRD1
Human Protein AtlasENSG00000277399
Peptide AtlasQ6PRD1
HPRD13602
IPIIPI00419908   
Protein Interaction databases
DIP (DOE-UCLA)Q6PRD1
IntAct (EBI)Q6PRD1
FunCoupENSG00000277399
BioGRIDGPR179
STRING (EMBL)GPR179
ZODIACGPR179
Ontologies - Pathways
QuickGOQ6PRD1
Ontology : AmiGOG-protein coupled receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  visual perception  integral component of membrane  
Ontology : EGO-EBIG-protein coupled receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  visual perception  integral component of membrane  
NDEx NetworkGPR179
Atlas of Cancer Signalling NetworkGPR179
Wikipedia pathwaysGPR179
Orthology - Evolution
OrthoDB440435
GeneTree (enSembl)ENSG00000277399
Phylogenetic Trees/Animal Genes : TreeFamGPR179
HOVERGENQ6PRD1
HOGENOMQ6PRD1
Homologs : HomoloGeneGPR179
Homology/Alignments : Family Browser (UCSC)GPR179
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGPR179 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPR179
dbVarGPR179
ClinVarGPR179
1000_GenomesGPR179 
Exome Variant ServerGPR179
ExAC (Exome Aggregation Consortium)GPR179 (select the gene name)
Genetic variants : HAPMAP440435
Genomic Variants (DGV)GPR179 [DGVbeta]
DECIPHERGPR179 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGPR179 
Mutations
ICGC Data PortalGPR179 
TCGA Data PortalGPR179 
Broad Tumor PortalGPR179
OASIS PortalGPR179 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGPR179
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
BioMutasearch GPR179
DgiDB (Drug Gene Interaction Database)GPR179
DoCM (Curated mutations)GPR179 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GPR179 (select a term)
intoGenGPR179
Cancer3DGPR179(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614515    614565   
Orphanet923   
MedgenGPR179
Genetic Testing Registry GPR179
NextProtQ6PRD1 [Medical]
TSGene440435
GENETestsGPR179
Target ValidationGPR179
Huge Navigator GPR179 [HugePedia]
snp3D : Map Gene to Disease440435
BioCentury BCIQGPR179
ClinGenGPR179
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440435
Chemical/Pharm GKB GenePA134900696
Clinical trialGPR179
Miscellaneous
canSAR (ICR)GPR179 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPR179
EVEXGPR179
GoPubMedGPR179
iHOPGPR179
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:51:14 CEST 2017

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