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GPR18 (G protein-coupled receptor 18)

Identity

HGNC (Hugo) GPR18
LocusID (NCBI) 2841
Atlas_Id 52180
Location 13q32.3
Location_base_pair Starts at 99906967 and ends at 99910682 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GPR18   4472
Cards
Entrez_Gene (NCBI)GPR18  2841  G protein-coupled receptor 18
GeneCards (Weizmann)GPR18
Ensembl hg19 (Hinxton)ENSG00000125245 [Gene_View]  chr13:99906967-99910682 [Contig_View]  GPR18 [Vega]
Ensembl hg38 (Hinxton)ENSG00000125245 [Gene_View]  chr13:99906967-99910682 [Contig_View]  GPR18 [Vega]
ICGC DataPortalENSG00000125245
TCGA cBioPortalGPR18
AceView (NCBI)GPR18
Genatlas (Paris)GPR18
WikiGenes2841
SOURCE (Princeton)GPR18
Genomic and cartography
GoldenPath hg19 (UCSC)GPR18  -     chr13:99906967-99910682 -  13q32.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GPR18  -     13q32.3   [Description]    (hg38-Dec_2013)
EnsemblGPR18 - 13q32.3 [CytoView hg19]  GPR18 - 13q32.3 [CytoView hg38]
Mapping of homologs : NCBIGPR18 [Mapview hg19]  GPR18 [Mapview hg38]
OMIM602042   
Gene and transcription
Genbank (Entrez)AA825595 AF261135 AF339781 BC008569 BC050646
RefSeq transcript (Entrez)NM_001098200 NM_005292
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_009952 NW_004929389
Consensus coding sequences : CCDS (NCBI)GPR18
Cluster EST : UnigeneHs.741589 [ NCBI ]
CGAP (NCI)Hs.741589
Alternative Splicing GalleryENSG00000125245
Gene ExpressionGPR18 [ NCBI-GEO ]   GPR18 [ EBI - ARRAY_EXPRESS ]   GPR18 [ SEEK ]   GPR18 [ MEM ]
Gene Expression Viewer (FireBrowse)GPR18 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2841
GTEX Portal (Tissue expression)GPR18
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14330 (Uniprot)
NextProtQ14330  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14330
Splice isoforms : SwissVarQ14330 (Swissvar)
PhosPhoSitePlusQ14330
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    GPR18   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
DMDM Disease mutations2841
Blocks (Seattle)GPR18
SuperfamilyQ14330
Human Protein AtlasENSG00000125245
Peptide AtlasQ14330
HPRD03621
IPIIPI00555618   IPI00640571   
Protein Interaction databases
DIP (DOE-UCLA)Q14330
IntAct (EBI)Q14330
FunCoupENSG00000125245
BioGRIDGPR18
STRING (EMBL)GPR18
ZODIACGPR18
Ontologies - Pathways
QuickGOQ14330
Ontology : AmiGOG-protein coupled receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  
Ontology : EGO-EBIG-protein coupled receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  
NDEx Network
Atlas of Cancer Signalling NetworkGPR18
Wikipedia pathwaysGPR18
Orthology - Evolution
OrthoDB2841
GeneTree (enSembl)ENSG00000125245
Phylogenetic Trees/Animal Genes : TreeFamGPR18
Homologs : HomoloGeneGPR18
Homology/Alignments : Family Browser (UCSC)GPR18
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerGPR18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPR18
dbVarGPR18
ClinVarGPR18
1000_GenomesGPR18 
Exome Variant ServerGPR18
ExAC (Exome Aggregation Consortium)GPR18 (select the gene name)
Genetic variants : HAPMAP2841
Genomic Variants (DGV)GPR18 [DGVbeta]
Mutations
ICGC Data PortalGPR18 
TCGA Data PortalGPR18 
Broad Tumor PortalGPR18
OASIS PortalGPR18 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGPR18 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GPR18
DgiDB (Drug Gene Interaction Database)GPR18
DoCM (Curated mutations)GPR18 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GPR18 (select a term)
intoGenGPR18
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)13:99906967-99910682  ENSG00000125245
CONAN: Copy Number AnalysisGPR18 
Mutations and Diseases : HGMDGPR18
OMIM602042   
MedgenGPR18
Genetic Testing Registry GPR18
NextProtQ14330 [Medical]
TSGene2841
GENETestsGPR18
Huge Navigator GPR18 [HugePedia]
snp3D : Map Gene to Disease2841
BioCentury BCIQGPR18
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2841
Chemical/Pharm GKB GenePA28860
Clinical trialGPR18
Miscellaneous
canSAR (ICR)GPR18 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPR18
EVEXGPR18
GoPubMedGPR18
iHOPGPR18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun May 8 18:48:09 CEST 2016

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