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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret
Donations are also welcome

Donate (in Euros)

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GPR18 (G protein-coupled receptor 18)

Identity

Other names-
HGNC (Hugo) GPR18
LocusID (NCBI) 2841
Location 13q32.3
Location_base_pair Starts at 99906967 and ends at 99910682 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)GPR18   4472
Cards
Entrez_Gene (NCBI)GPR18  2841  G protein-coupled receptor 18
GeneCards (Weizmann)GPR18
Ensembl hg19 (Hinxton)ENSG00000125245 [Gene_View]  chr13:99906967-99910682 [Contig_View]  GPR18 [Vega]
Ensembl hg38 (Hinxton)ENSG00000125245 [Gene_View]  chr13:99906967-99910682 [Contig_View]  GPR18 [Vega]
ICGC DataPortalENSG00000125245
cBioPortalGPR18
AceView (NCBI)GPR18
Genatlas (Paris)GPR18
WikiGenes2841
SOURCE (Princeton)GPR18
Genomic and cartography
GoldenPath hg19 (UCSC)GPR18  -     chr13:99906967-99910682 -  13q32.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GPR18  -     13q32.3   [Description]    (hg38-Dec_2013)
EnsemblGPR18 - 13q32.3 [CytoView hg19]  GPR18 - 13q32.3 [CytoView hg38]
Mapping of homologs : NCBIGPR18 [Mapview hg19]  GPR18 [Mapview hg38]
OMIM602042   
Gene and transcription
Genbank (Entrez)AA825595 AF261135 AF339781 BC008569 BC050646
RefSeq transcript (Entrez)NM_001098200 NM_005292
RefSeq genomic (Entrez)AC_000145 NC_000013 NC_018924 NT_009952 NW_001838084 NW_004929389
Consensus coding sequences : CCDS (NCBI)GPR18
Cluster EST : UnigeneHs.741589 [ NCBI ]
CGAP (NCI)Hs.741589
Alternative Splicing : Fast-db (Paris)GSHG0008603
Alternative Splicing GalleryENSG00000125245
Gene ExpressionGPR18 [ NCBI-GEO ]     GPR18 [ SEEK ]   GPR18 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14330 (Uniprot)
NextProtQ14330  [Medical]
With graphics : InterProQ14330
Splice isoforms : SwissVarQ14330 (Swissvar)
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    GPR18   
Related proteins : CluSTrQ14330
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
DMDM Disease mutations2841
Blocks (Seattle)Q14330
Human Protein AtlasENSG00000125245
Peptide AtlasQ14330
HPRD03621
IPIIPI00555618   IPI00640571   
Protein Interaction databases
DIP (DOE-UCLA)Q14330
IntAct (EBI)Q14330
FunCoupENSG00000125245
BioGRIDGPR18
IntegromeDBGPR18
STRING (EMBL)GPR18
Ontologies - Pathways
QuickGOQ14330
Ontology : AmiGOG-protein coupled receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  
Ontology : EGO-EBIG-protein coupled receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  
Protein Interaction DatabaseGPR18
DoCM (Curated mutations)GPR18
Wikipedia pathwaysGPR18
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerGPR18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPR18
dbVarGPR18
ClinVarGPR18
1000_GenomesGPR18 
Exome Variant ServerGPR18
SNP (GeneSNP Utah)GPR18
SNP : HGBaseGPR18
Genetic variants : HAPMAPGPR18
Genomic Variants (DGV)GPR18 [DGVbeta]
Mutations
ICGC Data PortalENSG00000125245 
Somatic Mutations in Cancer : COSMICGPR18 
CONAN: Copy Number AnalysisGPR18 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)13:99906967-99910682
Mutations and Diseases : HGMDGPR18
OMIM602042   
MedgenGPR18
NextProtQ14330 [Medical]
GENETestsGPR18
Disease Genetic AssociationGPR18
Huge Navigator GPR18 [HugePedia]  GPR18 [HugeCancerGEM]
snp3D : Map Gene to Disease2841
DGIdb (Drug Gene Interaction db)GPR18
General knowledge
Homologs : HomoloGeneGPR18
Homology/Alignments : Family Browser (UCSC)GPR18
Phylogenetic Trees/Animal Genes : TreeFamGPR18
Chemical/Protein Interactions : CTD2841
Chemical/Pharm GKB GenePA28860
Clinical trialGPR18
Cancer Resource (Charite)ENSG00000125245
Other databases
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
CoreMineGPR18
GoPubMedGPR18
iHOPGPR18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 14 16:04:40 CET 2015

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