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GPR180 (G protein-coupled receptor 180)

Identity

Alias_symbol (synonym)ITR
Other alias
HGNC (Hugo) GPR180
LocusID (NCBI) 160897
Atlas_Id 63981
Location 13q32.1  [Link to chromosome band 13q32]
Location_base_pair Starts at 94601850 and ends at 94634645 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GPR180 (13q32.1) / GPC6 (13q31.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GPR180   28899
Cards
Entrez_Gene (NCBI)GPR180  160897  G protein-coupled receptor 180
AliasesITR
GeneCards (Weizmann)GPR180
Ensembl hg19 (Hinxton)ENSG00000152749 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000152749 [Gene_View]  chr13:94601850-94634645 [Contig_View]  GPR180 [Vega]
ICGC DataPortalENSG00000152749
TCGA cBioPortalGPR180
AceView (NCBI)GPR180
Genatlas (Paris)GPR180
WikiGenes160897
SOURCE (Princeton)GPR180
Genetics Home Reference (NIH)GPR180
Genomic and cartography
GoldenPath hg38 (UCSC)GPR180  -     chr13:94601850-94634645 +  13q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GPR180  -     13q32.1   [Description]    (hg19-Feb_2009)
EnsemblGPR180 - 13q32.1 [CytoView hg19]  GPR180 - 13q32.1 [CytoView hg38]
Mapping of homologs : NCBIGPR180 [Mapview hg19]  GPR180 [Mapview hg38]
OMIM607787   
Gene and transcription
Genbank (Entrez)AF339784 AI016274 AK024059 AK126794 AK289850
RefSeq transcript (Entrez)NM_180989
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GPR180
Cluster EST : UnigeneHs.439363 [ NCBI ]
CGAP (NCI)Hs.439363
Alternative Splicing GalleryENSG00000152749
Gene ExpressionGPR180 [ NCBI-GEO ]   GPR180 [ EBI - ARRAY_EXPRESS ]   GPR180 [ SEEK ]   GPR180 [ MEM ]
Gene Expression Viewer (FireBrowse)GPR180 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)160897
GTEX Portal (Tissue expression)GPR180
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86V85   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86V85  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86V85
Splice isoforms : SwissVarQ86V85
PhosPhoSitePlusQ86V85
Domains : Interpro (EBI)Intimal_thickness-rel_rcpt   
Domain families : Pfam (Sanger)GpcrRhopsn4 (PF10192)   
Domain families : Pfam (NCBI)pfam10192   
Conserved Domain (NCBI)GPR180
DMDM Disease mutations160897
Blocks (Seattle)GPR180
SuperfamilyQ86V85
Human Protein AtlasENSG00000152749
Peptide AtlasQ86V85
HPRD16258
IPIIPI00646291   
Protein Interaction databases
DIP (DOE-UCLA)Q86V85
IntAct (EBI)Q86V85
FunCoupENSG00000152749
BioGRIDGPR180
STRING (EMBL)GPR180
ZODIACGPR180
Ontologies - Pathways
QuickGOQ86V85
Ontology : AmiGOG-protein coupled receptor signaling pathway  integral component of membrane  response to pheromone  extracellular exosome  
Ontology : EGO-EBIG-protein coupled receptor signaling pathway  integral component of membrane  response to pheromone  extracellular exosome  
NDEx NetworkGPR180
Atlas of Cancer Signalling NetworkGPR180
Wikipedia pathwaysGPR180
Orthology - Evolution
OrthoDB160897
GeneTree (enSembl)ENSG00000152749
Phylogenetic Trees/Animal Genes : TreeFamGPR180
HOVERGENQ86V85
HOGENOMQ86V85
Homologs : HomoloGeneGPR180
Homology/Alignments : Family Browser (UCSC)GPR180
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGPR180 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPR180
dbVarGPR180
ClinVarGPR180
1000_GenomesGPR180 
Exome Variant ServerGPR180
ExAC (Exome Aggregation Consortium)GPR180 (select the gene name)
Genetic variants : HAPMAP160897
Genomic Variants (DGV)GPR180 [DGVbeta]
DECIPHERGPR180 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGPR180 
Mutations
ICGC Data PortalGPR180 
TCGA Data PortalGPR180 
Broad Tumor PortalGPR180
OASIS PortalGPR180 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGPR180  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGPR180
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GPR180
DgiDB (Drug Gene Interaction Database)GPR180
DoCM (Curated mutations)GPR180 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GPR180 (select a term)
intoGenGPR180
Cancer3DGPR180(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607787   
Orphanet
MedgenGPR180
Genetic Testing Registry GPR180
NextProtQ86V85 [Medical]
TSGene160897
GENETestsGPR180
Target ValidationGPR180
Huge Navigator GPR180 [HugePedia]
snp3D : Map Gene to Disease160897
BioCentury BCIQGPR180
ClinGenGPR180
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD160897
Chemical/Pharm GKB GenePA144596429
Clinical trialGPR180
Miscellaneous
canSAR (ICR)GPR180 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPR180
EVEXGPR180
GoPubMedGPR180
iHOPGPR180
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:51:14 CEST 2017

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