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GPR183 (G protein-coupled receptor 183)

Identity

Alias_namesEBI2
Epstein-Barr virus induced gene 2 (lymphocyte-specific G protein-coupled receptor)
Other aliashEBI2
HGNC (Hugo) GPR183
LocusID (NCBI) 1880
Atlas_Id 56392
Location 13q32.3  [Link to chromosome band 13q32]
Location_base_pair Starts at 99294535 and ends at 99307495 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GPR183   3128
Cards
Entrez_Gene (NCBI)GPR183  1880  G protein-coupled receptor 183
AliasesEBI2; hEBI2
GeneCards (Weizmann)GPR183
Ensembl hg19 (Hinxton)ENSG00000169508 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169508 [Gene_View]  chr13:99294535-99307495 [Contig_View]  GPR183 [Vega]
ICGC DataPortalENSG00000169508
TCGA cBioPortalGPR183
AceView (NCBI)GPR183
Genatlas (Paris)GPR183
WikiGenes1880
SOURCE (Princeton)GPR183
Genetics Home Reference (NIH)GPR183
Genomic and cartography
GoldenPath hg38 (UCSC)GPR183  -     chr13:99294535-99307495 -  13q32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GPR183  -     13q32.3   [Description]    (hg19-Feb_2009)
EnsemblGPR183 - 13q32.3 [CytoView hg19]  GPR183 - 13q32.3 [CytoView hg38]
Mapping of homologs : NCBIGPR183 [Mapview hg19]  GPR183 [Mapview hg38]
OMIM605741   
Gene and transcription
Genbank (Entrez)AI740732 AK223390 AK292091 AK313443 AW402166
RefSeq transcript (Entrez)NM_004951
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GPR183
Cluster EST : UnigeneHs.784 [ NCBI ]
CGAP (NCI)Hs.784
Alternative Splicing GalleryENSG00000169508
Gene ExpressionGPR183 [ NCBI-GEO ]   GPR183 [ EBI - ARRAY_EXPRESS ]   GPR183 [ SEEK ]   GPR183 [ MEM ]
Gene Expression Viewer (FireBrowse)GPR183 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1880
GTEX Portal (Tissue expression)GPR183
Human Protein AtlasENSG00000169508-GPR183 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP32249   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP32249  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP32249
Splice isoforms : SwissVarP32249
PhosPhoSitePlusP32249
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Domain families : Smart (EMBL)7TM_GPCR_Srsx (SM01381)  
Conserved Domain (NCBI)GPR183
DMDM Disease mutations1880
Blocks (Seattle)GPR183
SuperfamilyP32249
Human Protein Atlas [tissue]ENSG00000169508-GPR183 [tissue]
Peptide AtlasP32249
HPRD12040
IPIIPI00027688   
Protein Interaction databases
DIP (DOE-UCLA)P32249
IntAct (EBI)P32249
FunCoupENSG00000169508
BioGRIDGPR183
STRING (EMBL)GPR183
ZODIACGPR183
Ontologies - Pathways
QuickGOP32249
Ontology : AmiGOadaptive immune response  B cell activation involved in immune response  mature B cell differentiation involved in immune response  dendritic cell chemotaxis  G-protein coupled receptor activity  plasma membrane  plasma membrane  integral component of plasma membrane  immune response  humoral immune response  G-protein coupled receptor signaling pathway  oxysterol binding  oxysterol binding  T cell chemotaxis  osteoclast differentiation  leukocyte chemotaxis  positive regulation of B cell proliferation  dendritic cell homeostasis  T follicular helper cell differentiation  positive regulation of ERK1 and ERK2 cascade  regulation of astrocyte chemotaxis  
Ontology : EGO-EBIadaptive immune response  B cell activation involved in immune response  mature B cell differentiation involved in immune response  dendritic cell chemotaxis  G-protein coupled receptor activity  plasma membrane  plasma membrane  integral component of plasma membrane  immune response  humoral immune response  G-protein coupled receptor signaling pathway  oxysterol binding  oxysterol binding  T cell chemotaxis  osteoclast differentiation  leukocyte chemotaxis  positive regulation of B cell proliferation  dendritic cell homeostasis  T follicular helper cell differentiation  positive regulation of ERK1 and ERK2 cascade  regulation of astrocyte chemotaxis  
NDEx NetworkGPR183
Atlas of Cancer Signalling NetworkGPR183
Wikipedia pathwaysGPR183
Orthology - Evolution
OrthoDB1880
GeneTree (enSembl)ENSG00000169508
Phylogenetic Trees/Animal Genes : TreeFamGPR183
HOVERGENP32249
HOGENOMP32249
Homologs : HomoloGeneGPR183
Homology/Alignments : Family Browser (UCSC)GPR183
Gene fusions - Rearrangements
Tumor Fusion PortalGPR183
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGPR183 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPR183
dbVarGPR183
ClinVarGPR183
1000_GenomesGPR183 
Exome Variant ServerGPR183
ExAC (Exome Aggregation Consortium)ENSG00000169508
GNOMAD BrowserENSG00000169508
Genetic variants : HAPMAP1880
Genomic Variants (DGV)GPR183 [DGVbeta]
DECIPHERGPR183 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGPR183 
Mutations
ICGC Data PortalGPR183 
TCGA Data PortalGPR183 
Broad Tumor PortalGPR183
OASIS PortalGPR183 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGPR183  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGPR183
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GPR183
DgiDB (Drug Gene Interaction Database)GPR183
DoCM (Curated mutations)GPR183 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GPR183 (select a term)
intoGenGPR183
Cancer3DGPR183(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605741   
Orphanet
DisGeNETGPR183
MedgenGPR183
Genetic Testing Registry GPR183
NextProtP32249 [Medical]
TSGene1880
GENETestsGPR183
Target ValidationGPR183
Huge Navigator GPR183 [HugePedia]
snp3D : Map Gene to Disease1880
BioCentury BCIQGPR183
ClinGenGPR183
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1880
Chemical/Pharm GKB GenePA162390174
Clinical trialGPR183
Miscellaneous
canSAR (ICR)GPR183 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPR183
EVEXGPR183
GoPubMedGPR183
iHOPGPR183
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:15:11 CET 2017

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