Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GPR19 (G protein-coupled receptor 19)

Identity

Other alias-
HGNC (Hugo) GPR19
LocusID (NCBI) 2842
Atlas_Id 40741
Location 12p13.1  [Link to chromosome band 12p13]
Location_base_pair Starts at 12813995 and ends at 12849121 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CALU (7q32.1) / GPR19 (12p13.1)LRP6 (12p13.2) / GPR19 (12p13.1)SCD (10q24.31) / GPR19 (12p13.1)
LRP6 12p13.2 / GPR19 12p13.1SCD 10q24.31 / GPR19 12p13.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GPR19   4473
Cards
Entrez_Gene (NCBI)GPR19  2842  G protein-coupled receptor 19
Aliases
GeneCards (Weizmann)GPR19
Ensembl hg19 (Hinxton)ENSG00000183150 [Gene_View]  chr12:12813995-12849121 [Contig_View]  GPR19 [Vega]
Ensembl hg38 (Hinxton)ENSG00000183150 [Gene_View]  chr12:12813995-12849121 [Contig_View]  GPR19 [Vega]
ICGC DataPortalENSG00000183150
TCGA cBioPortalGPR19
AceView (NCBI)GPR19
Genatlas (Paris)GPR19
WikiGenes2842
SOURCE (Princeton)GPR19
Genetics Home Reference (NIH)GPR19
Genomic and cartography
GoldenPath hg19 (UCSC)GPR19  -     chr12:12813995-12849121 -  12p13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GPR19  -     12p13.1   [Description]    (hg38-Dec_2013)
EnsemblGPR19 - 12p13.1 [CytoView hg19]  GPR19 - 12p13.1 [CytoView hg38]
Mapping of homologs : NCBIGPR19 [Mapview hg19]  GPR19 [Mapview hg38]
OMIM602927   
Gene and transcription
Genbank (Entrez)AK074729 AK096388 BC150599 CR456832 DB022290
RefSeq transcript (Entrez)NM_006143
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_009714 NW_004929383
Consensus coding sequences : CCDS (NCBI)GPR19
Cluster EST : UnigeneHs.657862 [ NCBI ]
CGAP (NCI)Hs.657862
Alternative Splicing GalleryENSG00000183150
Gene ExpressionGPR19 [ NCBI-GEO ]   GPR19 [ EBI - ARRAY_EXPRESS ]   GPR19 [ SEEK ]   GPR19 [ MEM ]
Gene Expression Viewer (FireBrowse)GPR19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2842
GTEX Portal (Tissue expression)GPR19
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15760   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15760  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15760
Splice isoforms : SwissVarQ15760
PhosPhoSitePlusQ15760
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Conserved Domain (NCBI)GPR19
DMDM Disease mutations2842
Blocks (Seattle)GPR19
SuperfamilyQ15760
Human Protein AtlasENSG00000183150
Peptide AtlasQ15760
HPRD04236
IPIIPI00019489   IPI01009238   
Protein Interaction databases
DIP (DOE-UCLA)Q15760
IntAct (EBI)Q15760
FunCoupENSG00000183150
BioGRIDGPR19
STRING (EMBL)GPR19
ZODIACGPR19
Ontologies - Pathways
QuickGOQ15760
Ontology : AmiGOG-protein coupled receptor activity  integral component of plasma membrane  cell surface receptor signaling pathway  G-protein coupled receptor signaling pathway  
Ontology : EGO-EBIG-protein coupled receptor activity  integral component of plasma membrane  cell surface receptor signaling pathway  G-protein coupled receptor signaling pathway  
NDEx NetworkGPR19
Atlas of Cancer Signalling NetworkGPR19
Wikipedia pathwaysGPR19
Orthology - Evolution
OrthoDB2842
GeneTree (enSembl)ENSG00000183150
Phylogenetic Trees/Animal Genes : TreeFamGPR19
HOVERGENQ15760
HOGENOMQ15760
Homologs : HomoloGeneGPR19
Homology/Alignments : Family Browser (UCSC)GPR19
Gene fusions - Rearrangements
Fusion : MitelmanLRP6/GPR19 [12p13.2/12p13.1]  [t(12;12)(p13;p13)]  
Fusion : MitelmanSCD/GPR19 [10q24.31/12p13.1]  [t(10;12)(q24;p13)]  
Fusion: TCGALRP6 12p13.2 GPR19 12p13.1 BRCA
Fusion: TCGASCD 10q24.31 GPR19 12p13.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGPR19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPR19
dbVarGPR19
ClinVarGPR19
1000_GenomesGPR19 
Exome Variant ServerGPR19
ExAC (Exome Aggregation Consortium)GPR19 (select the gene name)
Genetic variants : HAPMAP2842
Genomic Variants (DGV)GPR19 [DGVbeta]
DECIPHER (Syndromes)12:12813995-12849121  ENSG00000183150
CONAN: Copy Number AnalysisGPR19 
Mutations
ICGC Data PortalGPR19 
TCGA Data PortalGPR19 
Broad Tumor PortalGPR19
OASIS PortalGPR19 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGPR19  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGPR19
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GPR19
DgiDB (Drug Gene Interaction Database)GPR19
DoCM (Curated mutations)GPR19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GPR19 (select a term)
intoGenGPR19
Cancer3DGPR19(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602927   
Orphanet
MedgenGPR19
Genetic Testing Registry GPR19
NextProtQ15760 [Medical]
TSGene2842
GENETestsGPR19
Huge Navigator GPR19 [HugePedia]
snp3D : Map Gene to Disease2842
BioCentury BCIQGPR19
ClinGenGPR19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2842
Chemical/Pharm GKB GenePA28861
Clinical trialGPR19
Miscellaneous
canSAR (ICR)GPR19 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPR19
EVEXGPR19
GoPubMedGPR19
iHOPGPR19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:08:03 CET 2017

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