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GPR20 (G protein-coupled receptor 20)

Identity

Other alias-
HGNC (Hugo) GPR20
LocusID (NCBI) 2843
Atlas_Id 63984
Location 8q24.3  [Link to chromosome band 8q24]
Location_base_pair Starts at 142366587 and ends at 142377365 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GPR20   4475
Cards
Entrez_Gene (NCBI)GPR20  2843  G protein-coupled receptor 20
Aliases
GeneCards (Weizmann)GPR20
Ensembl hg19 (Hinxton)ENSG00000204882 [Gene_View]  chr8:142366587-142377365 [Contig_View]  GPR20 [Vega]
Ensembl hg38 (Hinxton)ENSG00000204882 [Gene_View]  chr8:142366587-142377365 [Contig_View]  GPR20 [Vega]
ICGC DataPortalENSG00000204882
TCGA cBioPortalGPR20
AceView (NCBI)GPR20
Genatlas (Paris)GPR20
WikiGenes2843
SOURCE (Princeton)GPR20
Genetics Home Reference (NIH)GPR20
Genomic and cartography
GoldenPath hg19 (UCSC)GPR20  -     chr8:142366587-142377365 -  8q24.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GPR20  -     8q24.3   [Description]    (hg38-Dec_2013)
EnsemblGPR20 - 8q24.3 [CytoView hg19]  GPR20 - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBIGPR20 [Mapview hg19]  GPR20 [Mapview hg38]
OMIM601908   
Gene and transcription
Genbank (Entrez)AA601037 AB209066 AK026750 BC117409 DR006873
RefSeq transcript (Entrez)NM_005293
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008046 NT_187574 NW_004929340
Consensus coding sequences : CCDS (NCBI)GPR20
Cluster EST : UnigeneHs.188859 [ NCBI ]
CGAP (NCI)Hs.188859
Alternative Splicing GalleryENSG00000204882
Gene ExpressionGPR20 [ NCBI-GEO ]   GPR20 [ EBI - ARRAY_EXPRESS ]   GPR20 [ SEEK ]   GPR20 [ MEM ]
Gene Expression Viewer (FireBrowse)GPR20 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2843
GTEX Portal (Tissue expression)GPR20
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99678   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99678  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99678
Splice isoforms : SwissVarQ99678
PhosPhoSitePlusQ99678
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Conserved Domain (NCBI)GPR20
DMDM Disease mutations2843
Blocks (Seattle)GPR20
SuperfamilyQ99678
Human Protein AtlasENSG00000204882
Peptide AtlasQ99678
HPRD03550
IPIIPI00017042   
Protein Interaction databases
DIP (DOE-UCLA)Q99678
IntAct (EBI)Q99678
FunCoupENSG00000204882
BioGRIDGPR20
STRING (EMBL)GPR20
ZODIACGPR20
Ontologies - Pathways
QuickGOQ99678
Ontology : AmiGOG-protein coupled receptor activity  integral component of plasma membrane  G-protein coupled receptor signaling pathway  receptor complex  
Ontology : EGO-EBIG-protein coupled receptor activity  integral component of plasma membrane  G-protein coupled receptor signaling pathway  receptor complex  
NDEx NetworkGPR20
Atlas of Cancer Signalling NetworkGPR20
Wikipedia pathwaysGPR20
Orthology - Evolution
OrthoDB2843
GeneTree (enSembl)ENSG00000204882
Phylogenetic Trees/Animal Genes : TreeFamGPR20
HOVERGENQ99678
HOGENOMQ99678
Homologs : HomoloGeneGPR20
Homology/Alignments : Family Browser (UCSC)GPR20
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGPR20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPR20
dbVarGPR20
ClinVarGPR20
1000_GenomesGPR20 
Exome Variant ServerGPR20
ExAC (Exome Aggregation Consortium)GPR20 (select the gene name)
Genetic variants : HAPMAP2843
Genomic Variants (DGV)GPR20 [DGVbeta]
DECIPHER (Syndromes)8:142366587-142377365  ENSG00000204882
CONAN: Copy Number AnalysisGPR20 
Mutations
ICGC Data PortalGPR20 
TCGA Data PortalGPR20 
Broad Tumor PortalGPR20
OASIS PortalGPR20 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGPR20  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGPR20
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GPR20
DgiDB (Drug Gene Interaction Database)GPR20
DoCM (Curated mutations)GPR20 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GPR20 (select a term)
intoGenGPR20
Cancer3DGPR20(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601908   
Orphanet
MedgenGPR20
Genetic Testing Registry GPR20
NextProtQ99678 [Medical]
TSGene2843
GENETestsGPR20
Huge Navigator GPR20 [HugePedia]
snp3D : Map Gene to Disease2843
BioCentury BCIQGPR20
ClinGenGPR20
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2843
Chemical/Pharm GKB GenePA28863
Clinical trialGPR20
Miscellaneous
canSAR (ICR)GPR20 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPR20
EVEXGPR20
GoPubMedGPR20
iHOPGPR20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:06:43 CET 2017

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