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GPR22 (G protein-coupled receptor 22)

Identity

Other alias-
HGNC (Hugo) GPR22
LocusID (NCBI) 2845
Atlas_Id 63986
Location 7q22.3  [Link to chromosome band 7q22]
Location_base_pair Starts at 107470057 and ends at 107475680 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GPR22   4477
Cards
Entrez_Gene (NCBI)GPR22  2845  G protein-coupled receptor 22
Aliases
GeneCards (Weizmann)GPR22
Ensembl hg19 (Hinxton)ENSG00000172209 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172209 [Gene_View]  chr7:107470057-107475680 [Contig_View]  GPR22 [Vega]
ICGC DataPortalENSG00000172209
TCGA cBioPortalGPR22
AceView (NCBI)GPR22
Genatlas (Paris)GPR22
WikiGenes2845
SOURCE (Princeton)GPR22
Genetics Home Reference (NIH)GPR22
Genomic and cartography
GoldenPath hg38 (UCSC)GPR22  -     chr7:107470057-107475680 +  7q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GPR22  -     7q22.3   [Description]    (hg19-Feb_2009)
EnsemblGPR22 - 7q22.3 [CytoView hg19]  GPR22 - 7q22.3 [CytoView hg38]
Mapping of homologs : NCBIGPR22 [Mapview hg19]  GPR22 [Mapview hg38]
OMIM601910   
Gene and transcription
Genbank (Entrez)AB209270 AK122621 AK307393 BC045823 BC107128
RefSeq transcript (Entrez)NM_005295
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GPR22
Cluster EST : UnigeneHs.657277 [ NCBI ]
CGAP (NCI)Hs.657277
Alternative Splicing GalleryENSG00000172209
Gene ExpressionGPR22 [ NCBI-GEO ]   GPR22 [ EBI - ARRAY_EXPRESS ]   GPR22 [ SEEK ]   GPR22 [ MEM ]
Gene Expression Viewer (FireBrowse)GPR22 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2845
GTEX Portal (Tissue expression)GPR22
Human Protein AtlasENSG00000172209-GPR22 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99680   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99680  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99680
Splice isoforms : SwissVarQ99680
PhosPhoSitePlusQ99680
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Conserved Domain (NCBI)GPR22
DMDM Disease mutations2845
Blocks (Seattle)GPR22
SuperfamilyQ99680
Human Protein Atlas [tissue]ENSG00000172209-GPR22 [tissue]
Peptide AtlasQ99680
HPRD03552
IPIIPI00017060   
Protein Interaction databases
DIP (DOE-UCLA)Q99680
IntAct (EBI)Q99680
FunCoupENSG00000172209
BioGRIDGPR22
STRING (EMBL)GPR22
ZODIACGPR22
Ontologies - Pathways
QuickGOQ99680
Ontology : AmiGOG-protein coupled receptor activity  integral component of plasma membrane  G-protein coupled receptor signaling pathway  cellular response to hormone stimulus  peptide binding  response to peptide  
Ontology : EGO-EBIG-protein coupled receptor activity  integral component of plasma membrane  G-protein coupled receptor signaling pathway  cellular response to hormone stimulus  peptide binding  response to peptide  
NDEx NetworkGPR22
Atlas of Cancer Signalling NetworkGPR22
Wikipedia pathwaysGPR22
Orthology - Evolution
OrthoDB2845
GeneTree (enSembl)ENSG00000172209
Phylogenetic Trees/Animal Genes : TreeFamGPR22
HOVERGENQ99680
HOGENOMQ99680
Homologs : HomoloGeneGPR22
Homology/Alignments : Family Browser (UCSC)GPR22
Gene fusions - Rearrangements
Tumor Fusion PortalGPR22
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGPR22 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPR22
dbVarGPR22
ClinVarGPR22
1000_GenomesGPR22 
Exome Variant ServerGPR22
ExAC (Exome Aggregation Consortium)ENSG00000172209
GNOMAD BrowserENSG00000172209
Genetic variants : HAPMAP2845
Genomic Variants (DGV)GPR22 [DGVbeta]
DECIPHERGPR22 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGPR22 
Mutations
ICGC Data PortalGPR22 
TCGA Data PortalGPR22 
Broad Tumor PortalGPR22
OASIS PortalGPR22 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGPR22  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGPR22
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GPR22
DgiDB (Drug Gene Interaction Database)GPR22
DoCM (Curated mutations)GPR22 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GPR22 (select a term)
intoGenGPR22
Cancer3DGPR22(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601910   
Orphanet
DisGeNETGPR22
MedgenGPR22
Genetic Testing Registry GPR22
NextProtQ99680 [Medical]
TSGene2845
GENETestsGPR22
Target ValidationGPR22
Huge Navigator GPR22 [HugePedia]
snp3D : Map Gene to Disease2845
BioCentury BCIQGPR22
ClinGenGPR22
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2845
Chemical/Pharm GKB GenePA28865
Clinical trialGPR22
Miscellaneous
canSAR (ICR)GPR22 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPR22
EVEXGPR22
GoPubMedGPR22
iHOPGPR22
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:16:10 CET 2017

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