Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GPR42 (G protein-coupled receptor 42 (gene/pseudogene))

Identity

Alias_namesGPR42P
G protein-coupled receptor 42 pseudogene
Alias_symbol (synonym)GPR41L
FFAR3L
Other aliasFFAR1L
HGNC (Hugo) GPR42
LocusID (NCBI) 2866
Atlas_Id 63996
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 35862257 and ends at 35863308 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)GPR42   4500
Cards
Entrez_Gene (NCBI)GPR42  2866  G protein-coupled receptor 42 (gene/pseudogene)
AliasesFFAR1L; FFAR3L; GPR41L; GPR42P
GeneCards (Weizmann)GPR42
Ensembl hg19 (Hinxton) [Gene_View]  chr19:35862257-35863308 [Contig_View]  GPR42 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:35862257-35863308 [Contig_View]  GPR42 [Vega]
TCGA cBioPortalGPR42
AceView (NCBI)GPR42
Genatlas (Paris)GPR42
WikiGenes2866
SOURCE (Princeton)GPR42
Genetics Home Reference (NIH)GPR42
Genomic and cartography
GoldenPath hg19 (UCSC)GPR42  -     chr19:35862257-35863308 +  19q13.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GPR42  -     19q13.12   [Description]    (hg38-Dec_2013)
EnsemblGPR42 - 19q13.12 [CytoView hg19]  GPR42 - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBIGPR42 [Mapview hg19]  GPR42 [Mapview hg38]
OMIM603822   
Gene and transcription
Genbank (Entrez)BC156085 BC156953
RefSeq transcript (Entrez)NM_005305
RefSeq genomic (Entrez)NC_000019 NC_018930 NG_008348 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)GPR42
Gene ExpressionGPR42 [ NCBI-GEO ]   GPR42 [ EBI - ARRAY_EXPRESS ]   GPR42 [ SEEK ]   GPR42 [ MEM ]
Gene Expression Viewer (FireBrowse)GPR42 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2866
GTEX Portal (Tissue expression)GPR42
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15529   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15529  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15529
Splice isoforms : SwissVarO15529
PhosPhoSitePlusO15529
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    GPR40-rel_orph   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Conserved Domain (NCBI)GPR42
DMDM Disease mutations2866
Blocks (Seattle)GPR42
SuperfamilyO15529
Peptide AtlasO15529
HPRD16033
Protein Interaction databases
DIP (DOE-UCLA)O15529
IntAct (EBI)O15529
BioGRIDGPR42
STRING (EMBL)GPR42
ZODIACGPR42
Ontologies - Pathways
QuickGOO15529
Ontology : AmiGOG-protein coupled receptor activity  G-protein coupled receptor activity  integral component of plasma membrane  G-protein coupled receptor signaling pathway  G-protein coupled receptor signaling pathway  
Ontology : EGO-EBIG-protein coupled receptor activity  G-protein coupled receptor activity  integral component of plasma membrane  G-protein coupled receptor signaling pathway  G-protein coupled receptor signaling pathway  
NDEx NetworkGPR42
Atlas of Cancer Signalling NetworkGPR42
Wikipedia pathwaysGPR42
Orthology - Evolution
OrthoDB2866
Phylogenetic Trees/Animal Genes : TreeFamGPR42
HOVERGENO15529
HOGENOMO15529
Homologs : HomoloGeneGPR42
Homology/Alignments : Family Browser (UCSC)GPR42
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGPR42 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPR42
dbVarGPR42
ClinVarGPR42
1000_GenomesGPR42 
Exome Variant ServerGPR42
ExAC (Exome Aggregation Consortium)GPR42 (select the gene name)
Genetic variants : HAPMAP2866
Genomic Variants (DGV)GPR42 [DGVbeta]
DECIPHER (Syndromes)19:35862257-35863308  
CONAN: Copy Number AnalysisGPR42 
Mutations
ICGC Data PortalGPR42 
TCGA Data PortalGPR42 
Broad Tumor PortalGPR42
OASIS PortalGPR42 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGPR42  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGPR42
BioMutasearch GPR42
DgiDB (Drug Gene Interaction Database)GPR42
DoCM (Curated mutations)GPR42 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GPR42 (select a term)
intoGenGPR42
Cancer3DGPR42(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603822   
Orphanet
MedgenGPR42
Genetic Testing Registry GPR42
NextProtO15529 [Medical]
TSGene2866
GENETestsGPR42
Huge Navigator GPR42 [HugePedia]
snp3D : Map Gene to Disease2866
BioCentury BCIQGPR42
ClinGenGPR42
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2866
Chemical/Pharm GKB GenePA28889
Clinical trialGPR42
Miscellaneous
canSAR (ICR)GPR42 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPR42
EVEXGPR42
GoPubMedGPR42
iHOPGPR42
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:06:45 CET 2017

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