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GPR50 (G protein-coupled receptor 50)

Identity

Alias_symbol (synonym)H9
Mel1c
Other alias
HGNC (Hugo) GPR50
LocusID (NCBI) 9248
Atlas_Id 63998
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 150345056 and ends at 150349937 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GPR50   4506
Cards
Entrez_Gene (NCBI)GPR50  9248  G protein-coupled receptor 50
AliasesH9; Mel1c
GeneCards (Weizmann)GPR50
Ensembl hg19 (Hinxton)ENSG00000102195 [Gene_View]  chrX:150345056-150349937 [Contig_View]  GPR50 [Vega]
Ensembl hg38 (Hinxton)ENSG00000102195 [Gene_View]  chrX:150345056-150349937 [Contig_View]  GPR50 [Vega]
ICGC DataPortalENSG00000102195
TCGA cBioPortalGPR50
AceView (NCBI)GPR50
Genatlas (Paris)GPR50
WikiGenes9248
SOURCE (Princeton)GPR50
Genetics Home Reference (NIH)GPR50
Genomic and cartography
GoldenPath hg19 (UCSC)GPR50  -     chrX:150345056-150349937 +  Xq28   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GPR50  -     Xq28   [Description]    (hg38-Dec_2013)
EnsemblGPR50 - Xq28 [CytoView hg19]  GPR50 - Xq28 [CytoView hg38]
Mapping of homologs : NCBIGPR50 [Mapview hg19]  GPR50 [Mapview hg38]
OMIM300207   
Gene and transcription
Genbank (Entrez)AY114101 AY114102 BC103696 BC105683 BC105684
RefSeq transcript (Entrez)NM_004224
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_016405 NT_011681 NW_004929448
Consensus coding sequences : CCDS (NCBI)GPR50
Cluster EST : UnigeneHs.567390 [ NCBI ]
CGAP (NCI)Hs.567390
Alternative Splicing GalleryENSG00000102195
Gene ExpressionGPR50 [ NCBI-GEO ]   GPR50 [ EBI - ARRAY_EXPRESS ]   GPR50 [ SEEK ]   GPR50 [ MEM ]
Gene Expression Viewer (FireBrowse)GPR50 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9248
GTEX Portal (Tissue expression)GPR50
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13585   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13585  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13585
Splice isoforms : SwissVarQ13585
PhosPhoSitePlusQ13585
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Mel_rcpt_1X    Melatonin_rcpt   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Conserved Domain (NCBI)GPR50
DMDM Disease mutations9248
Blocks (Seattle)GPR50
SuperfamilyQ13585
Human Protein AtlasENSG00000102195
Peptide AtlasQ13585
HPRD02194
IPIIPI00299062   IPI01011872   IPI00385198   
Protein Interaction databases
DIP (DOE-UCLA)Q13585
IntAct (EBI)Q13585
FunCoupENSG00000102195
BioGRIDGPR50
STRING (EMBL)GPR50
ZODIACGPR50
Ontologies - Pathways
QuickGOQ13585
Ontology : AmiGOG-protein coupled receptor activity  protein binding  integral component of plasma membrane  G-protein coupled receptor signaling pathway  cell-cell signaling  melatonin receptor activity  identical protein binding  
Ontology : EGO-EBIG-protein coupled receptor activity  protein binding  integral component of plasma membrane  G-protein coupled receptor signaling pathway  cell-cell signaling  melatonin receptor activity  identical protein binding  
Pathways : KEGGNeuroactive ligand-receptor interaction   
NDEx NetworkGPR50
Atlas of Cancer Signalling NetworkGPR50
Wikipedia pathwaysGPR50
Orthology - Evolution
OrthoDB9248
GeneTree (enSembl)ENSG00000102195
Phylogenetic Trees/Animal Genes : TreeFamGPR50
HOVERGENQ13585
HOGENOMQ13585
Homologs : HomoloGeneGPR50
Homology/Alignments : Family Browser (UCSC)GPR50
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGPR50 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPR50
dbVarGPR50
ClinVarGPR50
1000_GenomesGPR50 
Exome Variant ServerGPR50
ExAC (Exome Aggregation Consortium)GPR50 (select the gene name)
Genetic variants : HAPMAP9248
Genomic Variants (DGV)GPR50 [DGVbeta]
DECIPHER (Syndromes)X:150345056-150349937  ENSG00000102195
CONAN: Copy Number AnalysisGPR50 
Mutations
ICGC Data PortalGPR50 
TCGA Data PortalGPR50 
Broad Tumor PortalGPR50
OASIS PortalGPR50 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGPR50  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGPR50
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch GPR50
DgiDB (Drug Gene Interaction Database)GPR50
DoCM (Curated mutations)GPR50 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GPR50 (select a term)
intoGenGPR50
Cancer3DGPR50(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300207   
Orphanet
MedgenGPR50
Genetic Testing Registry GPR50
NextProtQ13585 [Medical]
TSGene9248
GENETestsGPR50
Huge Navigator GPR50 [HugePedia]
snp3D : Map Gene to Disease9248
BioCentury BCIQGPR50
ClinGenGPR50
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9248
Chemical/Pharm GKB GenePA28895
Clinical trialGPR50
Miscellaneous
canSAR (ICR)GPR50 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPR50
EVEXGPR50
GoPubMedGPR50
iHOPGPR50
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:06:46 CET 2017

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