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GPR55 (G protein-coupled receptor 55)

Identity

Other aliasLPIR1
HGNC (Hugo) GPR55
LocusID (NCBI) 9290
Atlas_Id 52097
Location 2q37.1  [Link to chromosome band 2q37]
Location_base_pair Starts at 230907328 and ends at 230925226 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GPR55   4511
Cards
Entrez_Gene (NCBI)GPR55  9290  G protein-coupled receptor 55
AliasesLPIR1
GeneCards (Weizmann)GPR55
Ensembl hg19 (Hinxton)ENSG00000135898 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135898 [Gene_View]  chr2:230907328-230925226 [Contig_View]  GPR55 [Vega]
ICGC DataPortalENSG00000135898
TCGA cBioPortalGPR55
AceView (NCBI)GPR55
Genatlas (Paris)GPR55
WikiGenes9290
SOURCE (Princeton)GPR55
Genetics Home Reference (NIH)GPR55
Genomic and cartography
GoldenPath hg38 (UCSC)GPR55  -     chr2:230907328-230925226 -  2q37.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GPR55  -     2q37.1   [Description]    (hg19-Feb_2009)
EnsemblGPR55 - 2q37.1 [CytoView hg19]  GPR55 - 2q37.1 [CytoView hg38]
Mapping of homologs : NCBIGPR55 [Mapview hg19]  GPR55 [Mapview hg38]
OMIM604107   
Gene and transcription
Genbank (Entrez)AK292223 BC032694 CR541776 DQ890881 DQ894035
RefSeq transcript (Entrez)NM_005683
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GPR55
Cluster EST : UnigeneHs.114545 [ NCBI ]
CGAP (NCI)Hs.114545
Alternative Splicing GalleryENSG00000135898
Gene ExpressionGPR55 [ NCBI-GEO ]   GPR55 [ EBI - ARRAY_EXPRESS ]   GPR55 [ SEEK ]   GPR55 [ MEM ]
Gene Expression Viewer (FireBrowse)GPR55 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9290
GTEX Portal (Tissue expression)GPR55
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2T6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2T6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2T6
Splice isoforms : SwissVarQ9Y2T6
PhosPhoSitePlusQ9Y2T6
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    GPR55   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Conserved Domain (NCBI)GPR55
DMDM Disease mutations9290
Blocks (Seattle)GPR55
SuperfamilyQ9Y2T6
Human Protein AtlasENSG00000135898
Peptide AtlasQ9Y2T6
HPRD07248
IPIIPI00328871   IPI00917455   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2T6
IntAct (EBI)Q9Y2T6
FunCoupENSG00000135898
BioGRIDGPR55
STRING (EMBL)GPR55
ZODIACGPR55
Ontologies - Pathways
QuickGOQ9Y2T6
Ontology : AmiGOG-protein coupled receptor activity  cannabinoid receptor activity  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  activation of phospholipase C activity  positive regulation of Rho protein signal transduction  cannabinoid signaling pathway  bone resorption  negative regulation of osteoclast differentiation  positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G-protein coupled signaling pathway  positive regulation of ERK1 and ERK2 cascade  
Ontology : EGO-EBIG-protein coupled receptor activity  cannabinoid receptor activity  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  activation of phospholipase C activity  positive regulation of Rho protein signal transduction  cannabinoid signaling pathway  bone resorption  negative regulation of osteoclast differentiation  positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G-protein coupled signaling pathway  positive regulation of ERK1 and ERK2 cascade  
NDEx NetworkGPR55
Atlas of Cancer Signalling NetworkGPR55
Wikipedia pathwaysGPR55
Orthology - Evolution
OrthoDB9290
GeneTree (enSembl)ENSG00000135898
Phylogenetic Trees/Animal Genes : TreeFamGPR55
HOVERGENQ9Y2T6
HOGENOMQ9Y2T6
Homologs : HomoloGeneGPR55
Homology/Alignments : Family Browser (UCSC)GPR55
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGPR55 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPR55
dbVarGPR55
ClinVarGPR55
1000_GenomesGPR55 
Exome Variant ServerGPR55
ExAC (Exome Aggregation Consortium)GPR55 (select the gene name)
Genetic variants : HAPMAP9290
Genomic Variants (DGV)GPR55 [DGVbeta]
DECIPHERGPR55 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGPR55 
Mutations
ICGC Data PortalGPR55 
TCGA Data PortalGPR55 
Broad Tumor PortalGPR55
OASIS PortalGPR55 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGPR55  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGPR55
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GPR55
DgiDB (Drug Gene Interaction Database)GPR55
DoCM (Curated mutations)GPR55 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GPR55 (select a term)
intoGenGPR55
Cancer3DGPR55(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604107   
Orphanet
MedgenGPR55
Genetic Testing Registry GPR55
NextProtQ9Y2T6 [Medical]
TSGene9290
GENETestsGPR55
Target ValidationGPR55
Huge Navigator GPR55 [HugePedia]
snp3D : Map Gene to Disease9290
BioCentury BCIQGPR55
ClinGenGPR55
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9290
Chemical/Pharm GKB GenePA28900
Clinical trialGPR55
Miscellaneous
canSAR (ICR)GPR55 (select the gene name)
Probes
Litterature
PubMed102 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPR55
EVEXGPR55
GoPubMedGPR55
iHOPGPR55
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:35:53 CEST 2017

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