Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GPR56 (G protein-coupled receptor 56)

Identity

Other namesBFPP
BPPR
TM7LN4
TM7XN1
HGNC (Hugo) GPR56
LocusID (NCBI) 9289
Location 16q21
Location_base_pair Starts at 57653910 and ends at 57698951 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GPR56   4512
Cards
Entrez_Gene (NCBI)GPR56  9289  G protein-coupled receptor 56
GeneCards (Weizmann)GPR56
Ensembl (Hinxton)ENSG00000205336 [Gene_View]  chr16:57653910-57698951 [Contig_View]  GPR56 [Vega]
ICGC DataPortalENSG00000205336
cBioPortalGPR56
AceView (NCBI)GPR56
Genatlas (Paris)GPR56
WikiGenes9289
SOURCE (Princeton)NM_001145770 NM_001145771 NM_001145772 NM_001145773 NM_001145774 NM_001290142 NM_001290143 NM_001290144 NM_005682 NM_201524 NM_201525
Genomic and cartography
GoldenPath (UCSC)GPR56  -  16q21   chr16:57653910-57698951 +  16q21   [Description]    (hg19-Feb_2009)
EnsemblGPR56 - 16q21 [CytoView]
Mapping of homologs : NCBIGPR56 [Mapview]
OMIM604110   606854   615752   
Gene and transcription
Genbank (Entrez)AF106858 AJ011001 AK074399 AK075270 AK075555
RefSeq transcript (Entrez)NM_001145770 NM_001145771 NM_001145772 NM_001145773 NM_001145774 NM_001290142 NM_001290143 NM_001290144 NM_005682 NM_201524 NM_201525
RefSeq genomic (Entrez)AC_000148 NC_000016 NC_018927 NG_011643 NT_010498 NW_001838290 NW_004929402
Consensus coding sequences : CCDS (NCBI)GPR56
Cluster EST : UnigeneHs.513633 [ NCBI ]
CGAP (NCI)Hs.513633
Alternative Splicing : Fast-db (Paris)GSHG0011238
Alternative Splicing GalleryENSG00000205336
Gene ExpressionGPR56 [ NCBI-GEO ]     GPR56 [ SEEK ]   GPR56 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y653 (Uniprot)
NextProtQ9Y653  [Medical]
With graphics : InterProQ9Y653
Splice isoforms : SwissVarQ9Y653 (Swissvar)
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F2_4 (PS50261)    GPS (PS50221)   
Domains : Interpro (EBI)GPCR_2-like [organisation]   GPCR_2_orphan_rcpt_GPR56 [organisation]   GPCR_2_secretin-like [organisation]   GPS [organisation]  
Related proteins : CluSTrQ9Y653
Domain families : Pfam (Sanger)7tm_2 (PF00002)    GPS (PF01825)   
Domain families : Pfam (NCBI)pfam00002    pfam01825   
Domain families : Smart (EMBL)GPS (SM00303)  
DMDM Disease mutations9289
Blocks (Seattle)Q9Y653
Human Protein AtlasENSG00000205336 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ9Y653
HPRD06824
IPIIPI00412420   IPI00397949   IPI00442012   IPI01014131   IPI00925577   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y653
IntAct (EBI)Q9Y653
FunCoupENSG00000205336
BioGRIDGPR56
InParanoidQ9Y653
Interologous Interaction database Q9Y653
IntegromeDBGPR56
STRING (EMBL)GPR56
Ontologies - Pathways
Ontology : AmiGOangiogenesis  G-protein coupled receptor activity  collagen binding  integral component of plasma membrane  cell adhesion  G-protein coupled receptor signaling pathway  neuropeptide signaling pathway  Rho protein signal transduction  cell-cell signaling  brain development  negative regulation of cell proliferation  vascular endothelial growth factor production  integral component of membrane  cerebral cortex radial glia guided migration  layer formation in cerebral cortex  positive regulation of Rho protein signal transduction  positive regulation of cell adhesion  extracellular matrix binding  extracellular vesicular exosome  protein kinase C signaling  glial limiting end-foot  negative regulation of neuron migration  
Ontology : EGO-EBIangiogenesis  G-protein coupled receptor activity  collagen binding  integral component of plasma membrane  cell adhesion  G-protein coupled receptor signaling pathway  neuropeptide signaling pathway  Rho protein signal transduction  cell-cell signaling  brain development  negative regulation of cell proliferation  vascular endothelial growth factor production  integral component of membrane  cerebral cortex radial glia guided migration  layer formation in cerebral cortex  positive regulation of Rho protein signal transduction  positive regulation of cell adhesion  extracellular matrix binding  extracellular vesicular exosome  protein kinase C signaling  glial limiting end-foot  negative regulation of neuron migration  
Protein Interaction DatabaseGPR56
Wikipedia pathwaysGPR56
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)GPR56
snp3D : Map Gene to Disease9289
SNP (GeneSNP Utah)GPR56
SNP : HGBaseGPR56
Genetic variants : HAPMAPGPR56
Exome VariantGPR56
1000_GenomesGPR56 
ICGC programENSG00000205336 
Somatic Mutations in Cancer : COSMICGPR56 
CONAN: Copy Number AnalysisGPR56 
Mutations and Diseases : HGMDGPR56
Mutations and Diseases : intOGenGPR56
Genomic VariantsGPR56  GPR56 [DGVbeta]
dbVarGPR56
ClinVarGPR56
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM604110    606854    615752   
MedgenGPR56
GENETestsGPR56
Disease Genetic AssociationGPR56
Huge Navigator GPR56 [HugePedia]  GPR56 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneGPR56
Homology/Alignments : Family Browser (UCSC)GPR56
Phylogenetic Trees/Animal Genes : TreeFamGPR56
Chemical/Protein Interactions : CTD9289
Chemical/Pharm GKB GenePA28901
Clinical trialGPR56
Cancer Resource (Charite)ENSG00000205336
Other databases
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
CoreMineGPR56
iHOPGPR56
OncoSearchGPR56
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 26 16:48:35 CEST 2014

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