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GPR56 (G protein-coupled receptor 56)

Identity

Other namesBFPP
BPPR
TM7LN4
TM7XN1
HGNC (Hugo) GPR56
LocusID (NCBI) 9289
Location 16q21
Location_base_pair Starts at 57653910 and ends at 57698951 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GPR56   4512
Cards
Entrez_Gene (NCBI)GPR56  9289  G protein-coupled receptor 56
GeneCards (Weizmann)GPR56
Ensembl hg19 (Hinxton)ENSG00000205336 [Gene_View]  chr16:57653910-57698951 [Contig_View]  GPR56 [Vega]
Ensembl hg38 (Hinxton)ENSG00000205336 [Gene_View]  chr16:57653910-57698951 [Contig_View]  GPR56 [Vega]
ICGC DataPortalENSG00000205336
cBioPortalGPR56
AceView (NCBI)GPR56
Genatlas (Paris)GPR56
WikiGenes9289
SOURCE (Princeton)GPR56
Genomic and cartography
GoldenPath hg19 (UCSC)GPR56  -     chr16:57653910-57698951 +  16q21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GPR56  -     16q21   [Description]    (hg38-Dec_2013)
EnsemblGPR56 - 16q21 [CytoView hg19]  GPR56 - 16q21 [CytoView hg38]
Mapping of homologs : NCBIGPR56 [Mapview hg19]  GPR56 [Mapview hg38]
OMIM604110   606854   615752   
Gene and transcription
Genbank (Entrez)AF106858 AJ011001 AK074399 AK075270 AK075555
RefSeq transcript (Entrez)NM_001145770 NM_001145771 NM_001145772 NM_001145773 NM_001145774 NM_001290142 NM_001290143 NM_001290144 NM_005682 NM_201524 NM_201525
RefSeq genomic (Entrez)AC_000148 NC_000016 NC_018927 NG_011643 NT_010498 NW_001838290 NW_004929402
Consensus coding sequences : CCDS (NCBI)GPR56
Cluster EST : UnigeneHs.513633 [ NCBI ]
CGAP (NCI)Hs.513633
Alternative Splicing : Fast-db (Paris)GSHG0011238
Alternative Splicing GalleryENSG00000205336
Gene ExpressionGPR56 [ NCBI-GEO ]     GPR56 [ SEEK ]   GPR56 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y653 (Uniprot)
NextProtQ9Y653  [Medical]
With graphics : InterProQ9Y653
Splice isoforms : SwissVarQ9Y653 (Swissvar)
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F2_4 (PS50261)    GPS (PS50221)   
Domains : Interpro (EBI)GPCR_2-like    GPCR_2_orphan_rcpt_GPR56    GPCR_2_secretin-like    GPS   
Related proteins : CluSTrQ9Y653
Domain families : Pfam (Sanger)7tm_2 (PF00002)    GPS (PF01825)   
Domain families : Pfam (NCBI)pfam00002    pfam01825   
Domain families : Smart (EMBL)GPS (SM00303)  
DMDM Disease mutations9289
Blocks (Seattle)Q9Y653
Human Protein AtlasENSG00000205336
Peptide AtlasQ9Y653
HPRD06824
IPIIPI00412420   IPI00397949   IPI00442012   IPI01014131   IPI00925577   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y653
IntAct (EBI)Q9Y653
FunCoupENSG00000205336
BioGRIDGPR56
IntegromeDBGPR56
STRING (EMBL)GPR56
Ontologies - Pathways
QuickGOQ9Y653
Ontology : AmiGOangiogenesis  G-protein coupled receptor activity  collagen binding  integral component of plasma membrane  cell adhesion  G-protein coupled receptor signaling pathway  neuropeptide signaling pathway  Rho protein signal transduction  cell-cell signaling  brain development  negative regulation of cell proliferation  vascular endothelial growth factor production  integral component of membrane  cerebral cortex radial glia guided migration  layer formation in cerebral cortex  positive regulation of Rho protein signal transduction  positive regulation of cell adhesion  extracellular matrix binding  extracellular vesicular exosome  protein kinase C signaling  glial limiting end-foot  negative regulation of neuron migration  
Ontology : EGO-EBIangiogenesis  G-protein coupled receptor activity  collagen binding  integral component of plasma membrane  cell adhesion  G-protein coupled receptor signaling pathway  neuropeptide signaling pathway  Rho protein signal transduction  cell-cell signaling  brain development  negative regulation of cell proliferation  vascular endothelial growth factor production  integral component of membrane  cerebral cortex radial glia guided migration  layer formation in cerebral cortex  positive regulation of Rho protein signal transduction  positive regulation of cell adhesion  extracellular matrix binding  extracellular vesicular exosome  protein kinase C signaling  glial limiting end-foot  negative regulation of neuron migration  
Protein Interaction DatabaseGPR56
DoCM (Curated mutations)GPR56
Wikipedia pathwaysGPR56
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerGPR56 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPR56
dbVarGPR56
ClinVarGPR56
1000_GenomesGPR56 
Exome Variant ServerGPR56
SNP (GeneSNP Utah)GPR56
SNP : HGBaseGPR56
Genetic variants : HAPMAPGPR56
Genomic VariantsGPR56  GPR56 [DGVbeta]
Mutations
ICGC Data PortalENSG00000205336 
Somatic Mutations in Cancer : COSMICGPR56 
CONAN: Copy Number AnalysisGPR56 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)16:57653910-57698951
Mutations and Diseases : HGMDGPR56
OMIM604110    606854    615752   
MedgenGPR56
NextProtQ9Y653 [Medical]
GENETestsGPR56
Disease Genetic AssociationGPR56
Huge Navigator GPR56 [HugePedia]  GPR56 [HugeCancerGEM]
snp3D : Map Gene to Disease9289
DGIdb (Drug Gene Interaction db)GPR56
General knowledge
Homologs : HomoloGeneGPR56
Homology/Alignments : Family Browser (UCSC)GPR56
Phylogenetic Trees/Animal Genes : TreeFamGPR56
Chemical/Protein Interactions : CTD9289
Chemical/Pharm GKB GenePA28901
Clinical trialGPR56
Cancer Resource (Charite)ENSG00000205336
Other databases
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
CoreMineGPR56
GoPubMedGPR56
iHOPGPR56
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 20 21:52:01 CET 2014

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