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GPR56 (G protein-coupled receptor 56)

Identity

Other namesBFPP
TM7LN4
TM7XN1
HGNC (Hugo) GPR56
LocusID (NCBI) 9289
Location 16q21
Location_base_pair Starts at 57653910 and ends at 57698944 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GPR56   4512
Entrez_Gene (NCBI)GPR56  9289  G protein-coupled receptor 56
Cards
GeneCards (Weizmann)GPR56
Ensembl (Hinxton)ENSG00000205336 [Gene_View]  chr16:57653910-57698944 [Contig_View]  GPR56 [Vega]
AceView (NCBI)GPR56
Genatlas (Paris)GPR56
SOURCE (Stanford)NM_001145770 NM_001145771 NM_001145772 NM_001145773 NM_001145774 NM_005682 NM_201524 NM_201525
Genomic and cartography
GoldenPath (UCSC)GPR56  -  16q21   chr16:57653910-57698944 +  16q21   [Description]    (hg19-Feb_2009)
EnsemblGPR56 - 16q21 [CytoView]
Mapping of homologs : NCBIGPR56 [Mapview]
OMIM604110   606854   
Gene and transcription
Genbank (Entrez)AF106858 AJ011001 AK074399 AK075270 AK075555
RefSeq transcript (SRS)NM_001145770 NM_001145771 NM_001145772 NM_001145773 NM_001145774 NM_005682 NM_201524 NM_201525
RefSeq transcript (Entrez)NM_001145770 NM_001145771 NM_001145772 NM_001145773 NM_001145774 NM_005682 NM_201524 NM_201525
RefSeq genomic (SRS)AC_000148 NC_000016 NC_018927 NG_011643 NT_010498 NW_001838290 NW_004078087
RefSeq genomic (Entrez)AC_000148 NC_000016 NC_018927 NG_011643 NT_010498 NW_001838290 NW_004078087
Consensus coding sequences : CCDS (NCBI)GPR56
Cluster EST : UnigeneHs.513633 [ SRS ] Hs.513633 [ NCBI ]
CGAP (NCI)Hs.513633
Alternative Splicing : Fast-db (Paris)GSHG0011238
Alternative Splicing GalleryENSG00000205336
Gene ExpressionGPR56 [ NCBI-GEO ]   GPR56 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y653 (SRS) Q9Y653 (Uniprot)
NextProtQ9Y653
With graphics : InterProQ9Y653
Splice isoforms : SwissVarQ9Y653(Swissvar)
Domaine pattern : Prosite (SRS)G_PROTEIN_RECEP_F2_2 (PS00650)    G_PROTEIN_RECEP_F2_4 (PS50261)    GPS (PS50221)   
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F2_2 (PS00650)    G_PROTEIN_RECEP_F2_4 (PS50261)    GPS (PS50221)   
Domains : Interpro (SRS)GPCR_2-like    GPCR_2_orphan_rcpt_GPR56    GPCR_2_secretin-like    GPS_dom   
Domains : Interpro (EBI)GPCR_2-like    GPCR_2_orphan_rcpt_GPR56    GPCR_2_secretin-like    GPS_dom   
Related proteins : CluSTrQ9Y653
Domain families : Pfam (SRS)7tm_2 (PF00002)    GPS (PF01825)   
Domain families : Pfam (Sanger)7tm_2 (PF00002)    GPS (PF01825)   
Domain families : Pfam (NCBI)pfam00002    pfam01825   
Domain families : Smart (EMBL)GPS (SM00303)  
DMDM9289
Blocks (Seattle)Q9Y653
Human Protein AtlasENSG00000205336
HPRD06824
IPIIPI00412420   IPI00397949   IPI00442012   IPI01014131   IPI00925577   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y653
IntAct (EBI)Q9Y653
FunCoupENSG00000205336
REACTOMEGPR56
Protein Interaction Database9289
BioGRIDGPR56
InParanoidQ9Y653
Interologous Interaction database Q9Y653
IntegromeDBGPR56
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)GPR56
SNP (GeneSNP Utah)GPR56
SNP : HGBaseGPR56
Genetic variants : HAPMAPGPR56
Somatic Mutations in Cancer : COSMICGPR56 
CONAN: Copy Number AnalysisGPR56 
Mutations and Diseases : HGMDGPR56
OMIM604110    606854   
GENETests604110    606854   
Disease Genetic AssociationGPR56
Huge Navigator GPR56 [HugePedia]  GPR56 [HugeCancerGEM]
Genomic VariantsGPR56  GPR56 [DGVbeta]
snp3D : Map Gene to Disease9289
General knowledge
Homologs : HomoloGeneGPR56
Homology/Alignments : Family Browser (UCSC)GPR56
Phylogenetic Trees/Animal Genes : TreeFamGPR56
Chemical/Protein Interactions : CTD9289
Chemical/Pharm GKB GenePA28901
Clinical trialGPR56
Cancer Resource (Charite)ENSG00000205336
Ontology : AmiGOG-protein coupled receptor activity  integral to plasma membrane  cell adhesion  cell adhesion  G-protein coupled receptor signaling pathway  neuropeptide signaling pathway  cell-cell signaling  brain development  integral to membrane  
Ontology : EGO-EBIG-protein coupled receptor activity  integral to plasma membrane  cell adhesion  cell adhesion  G-protein coupled receptor signaling pathway  neuropeptide signaling pathway  cell-cell signaling  brain development  integral to membrane  
Other databases
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
PubGeneGPR56
iHOPGPR56
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:33:30 CEST 2013
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