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GPR78 (G protein-coupled receptor 78)

Identity

Other alias-
HGNC (Hugo) GPR78
LocusID (NCBI) 27201
Atlas_Id 56812
Location 4p16.1  [Link to chromosome band 4p16]
Location_base_pair Starts at 8580490 and ends at 8590023 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GPR78   4528
Cards
Entrez_Gene (NCBI)GPR78  27201  G protein-coupled receptor 78
Aliases
GeneCards (Weizmann)GPR78
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr4:8580490-8590023 [Contig_View]  GPR78 [Vega]
TCGA cBioPortalGPR78
AceView (NCBI)GPR78
Genatlas (Paris)GPR78
WikiGenes27201
SOURCE (Princeton)GPR78
Genetics Home Reference (NIH)GPR78
Genomic and cartography
GoldenPath hg38 (UCSC)GPR78  -     chr4:8580490-8590023 +  4p16.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GPR78  -     4p16.1   [Description]    (hg19-Feb_2009)
EnsemblGPR78 - 4p16.1 [CytoView hg19]  GPR78 - 4p16.1 [CytoView hg38]
Mapping of homologs : NCBIGPR78 [Mapview hg19]  GPR78 [Mapview hg38]
OMIM606921   
Gene and transcription
Genbank (Entrez)AF411107 AK128807 AK307281 AK308759 AK313038
RefSeq transcript (Entrez)NM_080819
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GPR78
Cluster EST : UnigeneHs.740355 [ NCBI ]
CGAP (NCI)Hs.740355
Gene ExpressionGPR78 [ NCBI-GEO ]   GPR78 [ EBI - ARRAY_EXPRESS ]   GPR78 [ SEEK ]   GPR78 [ MEM ]
Gene Expression Viewer (FireBrowse)GPR78 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27201
GTEX Portal (Tissue expression)GPR78
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96P69   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96P69  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96P69
Splice isoforms : SwissVarQ96P69
PhosPhoSitePlusQ96P69
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Conserved Domain (NCBI)GPR78
DMDM Disease mutations27201
Blocks (Seattle)GPR78
SuperfamilyQ96P69
Peptide AtlasQ96P69
IPIIPI00044283   IPI00966956   
Protein Interaction databases
DIP (DOE-UCLA)Q96P69
IntAct (EBI)Q96P69
BioGRIDGPR78
STRING (EMBL)GPR78
ZODIACGPR78
Ontologies - Pathways
QuickGOQ96P69
Ontology : AmiGOG-protein coupled receptor activity  plasma membrane  adenylate cyclase-activating G-protein coupled receptor signaling pathway  integral component of membrane  
Ontology : EGO-EBIG-protein coupled receptor activity  plasma membrane  adenylate cyclase-activating G-protein coupled receptor signaling pathway  integral component of membrane  
NDEx NetworkGPR78
Atlas of Cancer Signalling NetworkGPR78
Wikipedia pathwaysGPR78
Orthology - Evolution
OrthoDB27201
Phylogenetic Trees/Animal Genes : TreeFamGPR78
HOVERGENQ96P69
HOGENOMQ96P69
Homologs : HomoloGeneGPR78
Homology/Alignments : Family Browser (UCSC)GPR78
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGPR78 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPR78
dbVarGPR78
ClinVarGPR78
1000_GenomesGPR78 
Exome Variant ServerGPR78
ExAC (Exome Aggregation Consortium)GPR78 (select the gene name)
Genetic variants : HAPMAP27201
Genomic Variants (DGV)GPR78 [DGVbeta]
DECIPHERGPR78 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGPR78 
Mutations
ICGC Data PortalGPR78 
TCGA Data PortalGPR78 
Broad Tumor PortalGPR78
OASIS PortalGPR78 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGPR78  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGPR78
BioMutasearch GPR78
DgiDB (Drug Gene Interaction Database)GPR78
DoCM (Curated mutations)GPR78 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GPR78 (select a term)
intoGenGPR78
Cancer3DGPR78(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606921   
Orphanet
MedgenGPR78
Genetic Testing Registry GPR78
NextProtQ96P69 [Medical]
TSGene27201
GENETestsGPR78
Target ValidationGPR78
Huge Navigator GPR78 [HugePedia]
snp3D : Map Gene to Disease27201
BioCentury BCIQGPR78
ClinGenGPR78
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27201
Chemical/Pharm GKB GenePA28921
Clinical trialGPR78
Miscellaneous
canSAR (ICR)GPR78 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPR78
EVEXGPR78
GoPubMedGPR78
iHOPGPR78
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:54:41 CEST 2017

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