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GPR88 (G protein-coupled receptor 88)

Identity

Alias_namesG-protein coupled receptor 88
G protein coupled receptor 88
Other aliasCOCPMR
STRG
HGNC (Hugo) GPR88
LocusID (NCBI) 54112
Atlas_Id 64011
Location 1p21.2  [Link to chromosome band 1p21]
Location_base_pair Starts at 100538172 and ends at 100542027 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GPR88   4539
Cards
Entrez_Gene (NCBI)GPR88  54112  G protein-coupled receptor 88
AliasesCOCPMR; STRG
GeneCards (Weizmann)GPR88
Ensembl hg19 (Hinxton)ENSG00000181656 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181656 [Gene_View]  chr1:100538172-100542027 [Contig_View]  GPR88 [Vega]
ICGC DataPortalENSG00000181656
TCGA cBioPortalGPR88
AceView (NCBI)GPR88
Genatlas (Paris)GPR88
WikiGenes54112
SOURCE (Princeton)GPR88
Genetics Home Reference (NIH)GPR88
Genomic and cartography
GoldenPath hg38 (UCSC)GPR88  -     chr1:100538172-100542027 +  1p21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GPR88  -     1p21.2   [Description]    (hg19-Feb_2009)
EnsemblGPR88 - 1p21.2 [CytoView hg19]  GPR88 - 1p21.2 [CytoView hg38]
Mapping of homologs : NCBIGPR88 [Mapview hg19]  GPR88 [Mapview hg38]
OMIM607468   616939   
Gene and transcription
Genbank (Entrez)AB042410 AF086060 AK225748 BC036775 BC172248
RefSeq transcript (Entrez)NM_022049
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GPR88
Cluster EST : UnigeneHs.170053 [ NCBI ]
CGAP (NCI)Hs.170053
Alternative Splicing GalleryENSG00000181656
Gene ExpressionGPR88 [ NCBI-GEO ]   GPR88 [ EBI - ARRAY_EXPRESS ]   GPR88 [ SEEK ]   GPR88 [ MEM ]
Gene Expression Viewer (FireBrowse)GPR88 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54112
GTEX Portal (Tissue expression)GPR88
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9GZN0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9GZN0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9GZN0
Splice isoforms : SwissVarQ9GZN0
PhosPhoSitePlusQ9GZN0
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Conserved Domain (NCBI)GPR88
DMDM Disease mutations54112
Blocks (Seattle)GPR88
SuperfamilyQ9GZN0
Human Protein AtlasENSG00000181656
Peptide AtlasQ9GZN0
HPRD16248
IPIIPI00004926   
Protein Interaction databases
DIP (DOE-UCLA)Q9GZN0
IntAct (EBI)Q9GZN0
FunCoupENSG00000181656
BioGRIDGPR88
STRING (EMBL)GPR88
ZODIACGPR88
Ontologies - Pathways
QuickGOQ9GZN0
Ontology : AmiGOmotor activity  G-protein coupled receptor activity  cellular_component  nucleus  cytoplasm  plasma membrane  G-protein coupled receptor signaling pathway  neuropeptide signaling pathway  chemical synaptic transmission  locomotory behavior  feeding behavior  integral component of membrane  neuronal action potential  neuromuscular process controlling balance  motor learning  
Ontology : EGO-EBImotor activity  G-protein coupled receptor activity  cellular_component  nucleus  cytoplasm  plasma membrane  G-protein coupled receptor signaling pathway  neuropeptide signaling pathway  chemical synaptic transmission  locomotory behavior  feeding behavior  integral component of membrane  neuronal action potential  neuromuscular process controlling balance  motor learning  
NDEx NetworkGPR88
Atlas of Cancer Signalling NetworkGPR88
Wikipedia pathwaysGPR88
Orthology - Evolution
OrthoDB54112
GeneTree (enSembl)ENSG00000181656
Phylogenetic Trees/Animal Genes : TreeFamGPR88
HOVERGENQ9GZN0
HOGENOMQ9GZN0
Homologs : HomoloGeneGPR88
Homology/Alignments : Family Browser (UCSC)GPR88
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGPR88 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPR88
dbVarGPR88
ClinVarGPR88
1000_GenomesGPR88 
Exome Variant ServerGPR88
ExAC (Exome Aggregation Consortium)GPR88 (select the gene name)
Genetic variants : HAPMAP54112
Genomic Variants (DGV)GPR88 [DGVbeta]
DECIPHERGPR88 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGPR88 
Mutations
ICGC Data PortalGPR88 
TCGA Data PortalGPR88 
Broad Tumor PortalGPR88
OASIS PortalGPR88 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGPR88  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGPR88
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GPR88
DgiDB (Drug Gene Interaction Database)GPR88
DoCM (Curated mutations)GPR88 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GPR88 (select a term)
intoGenGPR88
Cancer3DGPR88(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607468    616939   
Orphanet
MedgenGPR88
Genetic Testing Registry GPR88
NextProtQ9GZN0 [Medical]
TSGene54112
GENETestsGPR88
Target ValidationGPR88
Huge Navigator GPR88 [HugePedia]
snp3D : Map Gene to Disease54112
BioCentury BCIQGPR88
ClinGenGPR88
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54112
Chemical/Pharm GKB GenePA28932
Clinical trialGPR88
Miscellaneous
canSAR (ICR)GPR88 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPR88
EVEXGPR88
GoPubMedGPR88
iHOPGPR88
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:51:20 CEST 2017

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