Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

GPR89B (G protein-coupled receptor 89B)

Identity

Alias_namesGPR89
GPR89C
G protein-coupled receptor 89
G protein-coupled receptor 89C
Alias_symbol (synonym)SH120
Other aliasGPHR
UNQ192
HGNC (Hugo) GPR89B
LocusID (NCBI) 51463
Atlas_Id 64013
Location 1q21.2  [Link to chromosome band 1q21]
Location_base_pair Starts at 147928374 and ends at 147993592 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GPR89B   13840
Cards
Entrez_Gene (NCBI)GPR89B  51463  G protein-coupled receptor 89B
AliasesGPHR; GPR89; GPR89C; SH120; 
UNQ192
GeneCards (Weizmann)GPR89B
Ensembl hg19 (Hinxton)ENSG00000188092 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188092 [Gene_View]  ENSG00000188092 [Sequence]  chr1:147928374-147993592 [Contig_View]  GPR89B [Vega]
ICGC DataPortalENSG00000188092
TCGA cBioPortalGPR89B
AceView (NCBI)GPR89B
Genatlas (Paris)GPR89B
WikiGenes51463
SOURCE (Princeton)GPR89B
Genetics Home Reference (NIH)GPR89B
Genomic and cartography
GoldenPath hg38 (UCSC)GPR89B  -     chr1:147928374-147993592 +  1q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GPR89B  -     1q21.2   [Description]    (hg19-Feb_2009)
EnsemblGPR89B - 1q21.2 [CytoView hg19]  GPR89B - 1q21.2 [CytoView hg38]
Mapping of homologs : NCBIGPR89B [Mapview hg19]  GPR89B [Mapview hg38]
OMIM612806   
Gene and transcription
Genbank (Entrez)AF151035 AK299995 AK302266 AL133020 AW002571
RefSeq transcript (Entrez)NM_001097616 NM_001350180 NM_001350181 NM_001350182 NM_001350183 NM_001350184 NM_016334
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GPR89B
Cluster EST : UnigeneHs.680770 [ NCBI ]
CGAP (NCI)Hs.680770
Alternative Splicing GalleryENSG00000188092
Gene ExpressionGPR89B [ NCBI-GEO ]   GPR89B [ EBI - ARRAY_EXPRESS ]   GPR89B [ SEEK ]   GPR89B [ MEM ]
Gene Expression Viewer (FireBrowse)GPR89B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51463
GTEX Portal (Tissue expression)GPR89B
Human Protein AtlasENSG00000188092-GPR89B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CG08   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CG08  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CG08
Splice isoforms : SwissVarP0CG08
PhosPhoSitePlusP0CG08
Domains : Interpro (EBI)ABA_GPCR_dom    Golgi_pH-regulator_cons_dom    GPHR/GTG   
Domain families : Pfam (Sanger)ABA_GPCR (PF12430)    GPHR_N (PF12537)   
Domain families : Pfam (NCBI)pfam12430    pfam12537   
Conserved Domain (NCBI)GPR89B
DMDM Disease mutations51463
Blocks (Seattle)GPR89B
SuperfamilyP0CG08
Human Protein Atlas [tissue]ENSG00000188092-GPR89B [tissue]
Peptide AtlasP0CG08
HPRD13604
IPIIPI00472858   
Protein Interaction databases
DIP (DOE-UCLA)P0CG08
IntAct (EBI)P0CG08
FunCoupENSG00000188092
BioGRIDGPR89B
STRING (EMBL)GPR89B
ZODIACGPR89B
Ontologies - Pathways
QuickGOP0CG08
Ontology : AmiGOion transport  voltage-gated anion channel activity  protein transport  integral component of membrane  Golgi cisterna membrane  intracellular pH reduction  regulation of anion transmembrane transport  
Ontology : EGO-EBIion transport  voltage-gated anion channel activity  protein transport  integral component of membrane  Golgi cisterna membrane  intracellular pH reduction  regulation of anion transmembrane transport  
NDEx NetworkGPR89B
Atlas of Cancer Signalling NetworkGPR89B
Wikipedia pathwaysGPR89B
Orthology - Evolution
OrthoDB51463
GeneTree (enSembl)ENSG00000188092
Phylogenetic Trees/Animal Genes : TreeFamGPR89B
HOVERGENP0CG08
HOGENOMP0CG08
Homologs : HomoloGeneGPR89B
Homology/Alignments : Family Browser (UCSC)GPR89B
Gene fusions - Rearrangements
Fusion : QuiverGPR89B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGPR89B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPR89B
dbVarGPR89B
ClinVarGPR89B
1000_GenomesGPR89B 
Exome Variant ServerGPR89B
ExAC (Exome Aggregation Consortium)ENSG00000188092
GNOMAD BrowserENSG00000188092
Varsome BrowserGPR89B
Genetic variants : HAPMAP51463
Genomic Variants (DGV)GPR89B [DGVbeta]
DECIPHERGPR89B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGPR89B 
Mutations
ICGC Data PortalGPR89B 
TCGA Data PortalGPR89B 
Broad Tumor PortalGPR89B
OASIS PortalGPR89B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGPR89B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GPR89B
DgiDB (Drug Gene Interaction Database)GPR89B
DoCM (Curated mutations)GPR89B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GPR89B (select a term)
intoGenGPR89B
Cancer3DGPR89B(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612806   
Orphanet
DisGeNETGPR89B
MedgenGPR89B
Genetic Testing Registry GPR89B
NextProtP0CG08 [Medical]
TSGene51463
GENETestsGPR89B
Target ValidationGPR89B
Huge Navigator GPR89B [HugePedia]
snp3D : Map Gene to Disease51463
BioCentury BCIQGPR89B
ClinGenGPR89B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51463
Chemical/Pharm GKB GenePA143485480
Clinical trialGPR89B
Miscellaneous
canSAR (ICR)GPR89B (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPR89B
EVEXGPR89B
GoPubMedGPR89B
iHOPGPR89B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:47:57 CEST 2018
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.