Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

GPRC5D (G protein-coupled receptor class C group 5 member D)

Identity

Alias_namesG protein-coupled receptor, family C, group 5, member D
G protein-coupled receptor, class C, group 5, member D
Other alias-
HGNC (Hugo) GPRC5D
LocusID (NCBI) 55507
Atlas_Id 54079
Location 12p13.1  [Link to chromosome band 12p13]
Location_base_pair Starts at 13093709 and ends at 13103318 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GPRC5D   13310
Cards
Entrez_Gene (NCBI)GPRC5D  55507  G protein-coupled receptor class C group 5 member D
Aliases
GeneCards (Weizmann)GPRC5D
Ensembl hg19 (Hinxton)ENSG00000111291 [Gene_View]  chr12:13093709-13103318 [Contig_View]  GPRC5D [Vega]
Ensembl hg38 (Hinxton)ENSG00000111291 [Gene_View]  chr12:13093709-13103318 [Contig_View]  GPRC5D [Vega]
ICGC DataPortalENSG00000111291
TCGA cBioPortalGPRC5D
AceView (NCBI)GPRC5D
Genatlas (Paris)GPRC5D
WikiGenes55507
SOURCE (Princeton)GPRC5D
Genetics Home Reference (NIH)GPRC5D
Genomic and cartography
GoldenPath hg19 (UCSC)GPRC5D  -     chr12:13093709-13103318 -  12p13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GPRC5D  -     12p13.1   [Description]    (hg38-Dec_2013)
EnsemblGPRC5D - 12p13.1 [CytoView hg19]  GPRC5D - 12p13.1 [CytoView hg38]
Mapping of homologs : NCBIGPRC5D [Mapview hg19]  GPRC5D [Mapview hg38]
OMIM607437   
Gene and transcription
Genbank (Entrez)AB099817 AF209923 BC069341 BC107077 BC107078
RefSeq transcript (Entrez)NM_018654
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_009714 NW_004929383
Consensus coding sequences : CCDS (NCBI)GPRC5D
Cluster EST : UnigeneHs.644599 [ NCBI ]
CGAP (NCI)Hs.644599
Alternative Splicing GalleryENSG00000111291
Gene ExpressionGPRC5D [ NCBI-GEO ]   GPRC5D [ EBI - ARRAY_EXPRESS ]   GPRC5D [ SEEK ]   GPRC5D [ MEM ]
Gene Expression Viewer (FireBrowse)GPRC5D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55507
GTEX Portal (Tissue expression)GPRC5D
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NZD1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NZD1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NZD1
Splice isoforms : SwissVarQ9NZD1
PhosPhoSitePlusQ9NZD1
Domains : Interpro (EBI)GPCR_3_C   
Domain families : Pfam (Sanger)7tm_3 (PF00003)   
Domain families : Pfam (NCBI)pfam00003   
Conserved Domain (NCBI)GPRC5D
DMDM Disease mutations55507
Blocks (Seattle)GPRC5D
SuperfamilyQ9NZD1
Human Protein AtlasENSG00000111291
Peptide AtlasQ9NZD1
HPRD07604
IPIIPI00032870   IPI00410023   IPI00382997   IPI01009135   
Protein Interaction databases
DIP (DOE-UCLA)Q9NZD1
IntAct (EBI)Q9NZD1
FunCoupENSG00000111291
BioGRIDGPRC5D
STRING (EMBL)GPRC5D
ZODIACGPRC5D
Ontologies - Pathways
QuickGOQ9NZD1
Ontology : AmiGOG-protein coupled receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  
Ontology : EGO-EBIG-protein coupled receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  integral component of membrane  
NDEx NetworkGPRC5D
Atlas of Cancer Signalling NetworkGPRC5D
Wikipedia pathwaysGPRC5D
Orthology - Evolution
OrthoDB55507
GeneTree (enSembl)ENSG00000111291
Phylogenetic Trees/Animal Genes : TreeFamGPRC5D
HOVERGENQ9NZD1
HOGENOMQ9NZD1
Homologs : HomoloGeneGPRC5D
Homology/Alignments : Family Browser (UCSC)GPRC5D
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGPRC5D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPRC5D
dbVarGPRC5D
ClinVarGPRC5D
1000_GenomesGPRC5D 
Exome Variant ServerGPRC5D
ExAC (Exome Aggregation Consortium)GPRC5D (select the gene name)
Genetic variants : HAPMAP55507
Genomic Variants (DGV)GPRC5D [DGVbeta]
DECIPHER (Syndromes)12:13093709-13103318  ENSG00000111291
CONAN: Copy Number AnalysisGPRC5D 
Mutations
ICGC Data PortalGPRC5D 
TCGA Data PortalGPRC5D 
Broad Tumor PortalGPRC5D
OASIS PortalGPRC5D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGPRC5D  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGPRC5D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GPRC5D
DgiDB (Drug Gene Interaction Database)GPRC5D
DoCM (Curated mutations)GPRC5D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GPRC5D (select a term)
intoGenGPRC5D
Cancer3DGPRC5D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607437   
Orphanet
MedgenGPRC5D
Genetic Testing Registry GPRC5D
NextProtQ9NZD1 [Medical]
TSGene55507
GENETestsGPRC5D
Huge Navigator GPRC5D [HugePedia]
snp3D : Map Gene to Disease55507
BioCentury BCIQGPRC5D
ClinGenGPRC5D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55507
Chemical/Pharm GKB GenePA28940
Clinical trialGPRC5D
Miscellaneous
canSAR (ICR)GPRC5D (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPRC5D
EVEXGPRC5D
GoPubMedGPRC5D
iHOPGPRC5D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:08:05 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.