Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GPRIN3 (GPRIN family member 3)

Identity

Alias_symbol (synonym)GRIN3
FLJ42625
Other alias
HGNC (Hugo) GPRIN3
LocusID (NCBI) 285513
Atlas_Id 64021
Location 4q22.1  [Link to chromosome band 4q22]
Location_base_pair Starts at 89244278 and ends at 89308010 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GPRIN3   27733
Cards
Entrez_Gene (NCBI)GPRIN3  285513  GPRIN family member 3
AliasesGRIN3
GeneCards (Weizmann)GPRIN3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr4:89244278-89308010 [Contig_View]  GPRIN3 [Vega]
TCGA cBioPortalGPRIN3
AceView (NCBI)GPRIN3
Genatlas (Paris)GPRIN3
WikiGenes285513
SOURCE (Princeton)GPRIN3
Genetics Home Reference (NIH)GPRIN3
Genomic and cartography
GoldenPath hg38 (UCSC)GPRIN3  -     chr4:89244278-89308010 -  4q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GPRIN3  -     4q22.1   [Description]    (hg19-Feb_2009)
EnsemblGPRIN3 - 4q22.1 [CytoView hg19]  GPRIN3 - 4q22.1 [CytoView hg38]
Mapping of homologs : NCBIGPRIN3 [Mapview hg19]  GPRIN3 [Mapview hg38]
OMIM611241   
Gene and transcription
Genbank (Entrez)AB095947 AK026379 AK091461 AK124616 BC126371
RefSeq transcript (Entrez)NM_198281
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GPRIN3
Cluster EST : UnigeneHs.605082 [ NCBI ]
CGAP (NCI)Hs.605082
Gene ExpressionGPRIN3 [ NCBI-GEO ]   GPRIN3 [ EBI - ARRAY_EXPRESS ]   GPRIN3 [ SEEK ]   GPRIN3 [ MEM ]
Gene Expression Viewer (FireBrowse)GPRIN3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285513
GTEX Portal (Tissue expression)GPRIN3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZVF9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZVF9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZVF9
Splice isoforms : SwissVarQ6ZVF9
PhosPhoSitePlusQ6ZVF9
Domains : Interpro (EBI)GPRIN2-like/GPRIN3    GRIN_C   
Domain families : Pfam (Sanger)GRIN_C (PF15235)   
Domain families : Pfam (NCBI)pfam15235   
Conserved Domain (NCBI)GPRIN3
DMDM Disease mutations285513
Blocks (Seattle)GPRIN3
SuperfamilyQ6ZVF9
Peptide AtlasQ6ZVF9
HPRD14159
IPIIPI00216989   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZVF9
IntAct (EBI)Q6ZVF9
BioGRIDGPRIN3
STRING (EMBL)GPRIN3
ZODIACGPRIN3
Ontologies - Pathways
QuickGOQ6ZVF9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkGPRIN3
Atlas of Cancer Signalling NetworkGPRIN3
Wikipedia pathwaysGPRIN3
Orthology - Evolution
OrthoDB285513
Phylogenetic Trees/Animal Genes : TreeFamGPRIN3
HOVERGENQ6ZVF9
HOGENOMQ6ZVF9
Homologs : HomoloGeneGPRIN3
Homology/Alignments : Family Browser (UCSC)GPRIN3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGPRIN3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPRIN3
dbVarGPRIN3
ClinVarGPRIN3
1000_GenomesGPRIN3 
Exome Variant ServerGPRIN3
ExAC (Exome Aggregation Consortium)GPRIN3 (select the gene name)
Genetic variants : HAPMAP285513
Genomic Variants (DGV)GPRIN3 [DGVbeta]
DECIPHERGPRIN3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGPRIN3 
Mutations
ICGC Data PortalGPRIN3 
TCGA Data PortalGPRIN3 
Broad Tumor PortalGPRIN3
OASIS PortalGPRIN3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGPRIN3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGPRIN3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GPRIN3
DgiDB (Drug Gene Interaction Database)GPRIN3
DoCM (Curated mutations)GPRIN3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GPRIN3 (select a term)
intoGenGPRIN3
Cancer3DGPRIN3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611241   
Orphanet
MedgenGPRIN3
Genetic Testing Registry GPRIN3
NextProtQ6ZVF9 [Medical]
TSGene285513
GENETestsGPRIN3
Target ValidationGPRIN3
Huge Navigator GPRIN3 [HugePedia]
snp3D : Map Gene to Disease285513
BioCentury BCIQGPRIN3
ClinGenGPRIN3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285513
Chemical/Pharm GKB GenePA162390203
Clinical trialGPRIN3
Miscellaneous
canSAR (ICR)GPRIN3 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPRIN3
EVEXGPRIN3
GoPubMedGPRIN3
iHOPGPRIN3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:51:22 CEST 2017

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