Atlas of Genetics and Cytogenetics in Oncology and Haematology

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GPSM1 (G-protein signaling modulator 1)

Identity

Other namesAGS3
HGNC (Hugo) GPSM1
LocusID (NCBI) 26086
Location 9q34.3
Location_base_pair Starts at 139221932 and ends at 139254057 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GPSM1   17858
Entrez_Gene (NCBI)GPSM1  26086  G-protein signaling modulator 1
Cards
GeneCards (Weizmann)GPSM1
Ensembl (Hinxton)ENSG00000160360 [Gene_View]  chr9:139221932-139254057 [Contig_View]  GPSM1 [Vega]
AceView (NCBI)GPSM1
Genatlas (Paris)GPSM1
SOURCE (Stanford)NM_001145638 NM_001145639 NM_001200003 NM_015597
Genomic and cartography
GoldenPath (UCSC)GPSM1  -  9q34.3   chr9:139221932-139254057 +  9q34.3   [Description]    (hg19-Feb_2009)
EnsemblGPSM1 - 9q34.3 [CytoView]
Mapping of homologs : NCBIGPSM1 [Mapview]
OMIM609491   
Gene and transcription
Genbank (Entrez)AL117478 AL545250 AY173053 BC009943 BC009979
RefSeq transcript (SRS)NM_001145638 NM_001145639 NM_001200003 NM_015597
RefSeq transcript (Entrez)NM_001145638 NM_001145639 NM_001200003 NM_015597
RefSeq genomic (SRS)AC_000141 NC_000009 NC_018920 NG_028088 NT_024000 NW_001839245 NW_003315927 NW_004078061
RefSeq genomic (Entrez)AC_000141 NC_000009 NC_018920 NG_028088 NT_024000 NW_001839245 NW_003315927 NW_004078061
Consensus coding sequences : CCDS (NCBI)GPSM1
Cluster EST : UnigeneHs.239370 [ SRS ] Hs.239370 [ NCBI ]
CGAP (NCI)Hs.239370
Alternative Splicing : Fast-db (Paris)GSHG0030584
Alternative Splicing GalleryENSG00000160360
Gene ExpressionGPSM1 [ NCBI-GEO ]   GPSM1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86YR5 (SRS) Q86YR5 (Uniprot)
NextProtQ86YR5
With graphics : InterProQ86YR5
Splice isoforms : SwissVarQ86YR5(Swissvar)
Domaine pattern : Prosite (SRS)GOLOCO (PS50877)    TPR (PS50005)    TPR_REGION (PS50293)   
Domaine pattern : Prosite (Expaxy)GOLOCO (PS50877)    TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (SRS)G_prot_signal_mod_1    GoLoco_motif    TPR-1    TPR-contain_dom    TPR-like_helical    TPR_repeat   
Domains : Interpro (EBI)G_prot_signal_mod_1    GoLoco_motif    TPR-1    TPR-contain_dom    TPR-like_helical    TPR_repeat   
Related proteins : CluSTrQ86YR5
Domain families : Pfam (SRS)GoLoco (PF02188)    TPR_1 (PF00515)    TPR_7 (PF13176)   
Domain families : Pfam (Sanger)GoLoco (PF02188)    TPR_1 (PF00515)    TPR_7 (PF13176)   
Domain families : Pfam (NCBI)pfam02188    pfam00515    pfam13176   
Domain families : Smart (EMBL)GoLoco (SM00390)  TPR (SM00028)  
DMDM26086
Blocks (Seattle)Q86YR5
Human Protein AtlasENSG00000160360
HPRD17075
IPIIPI00941917   IPI00004948   IPI00939203   IPI00956562   
Protein Interaction databases
DIP (DOE-UCLA)Q86YR5
IntAct (EBI)Q86YR5
FunCoupENSG00000160360
REACTOMEGPSM1
Protein Interaction Database26086
BioGRIDGPSM1
InParanoidQ86YR5
Interologous Interaction database Q86YR5
IntegromeDBGPSM1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)GPSM1
SNP (GeneSNP Utah)GPSM1
SNP : HGBaseGPSM1
Genetic variants : HAPMAPGPSM1
Somatic Mutations in Cancer : COSMICGPSM1 
CONAN: Copy Number AnalysisGPSM1 
Mutations and Diseases : HGMDGPSM1
OMIM609491   
GENETests609491   
Disease Genetic AssociationGPSM1
Huge Navigator GPSM1 [HugePedia]  GPSM1 [HugeCancerGEM]
Genomic VariantsGPSM1  GPSM1 [DGVbeta]
snp3D : Map Gene to Disease26086
General knowledge
Homologs : HomoloGeneGPSM1
Homology/Alignments : Family Browser (UCSC)GPSM1
Phylogenetic Trees/Animal Genes : TreeFamGPSM1
Chemical/Protein Interactions : CTD26086
Chemical/Pharm GKB GenePA134986171
Clinical trialGPSM1
Cancer Resource (Charite)ENSG00000160360
Ontology : AmiGOGolgi membrane  G-protein alpha-subunit binding  GDP-dissociation inhibitor activity  nucleus  nucleolus  endoplasmic reticulum membrane  Golgi apparatus  cytosol  plasma membrane  signal transduction  nervous system development  regulation of G-protein coupled receptor protein signaling pathway  cell differentiation  
Ontology : EGO-EBIGolgi membrane  G-protein alpha-subunit binding  GDP-dissociation inhibitor activity  nucleus  nucleolus  endoplasmic reticulum membrane  Golgi apparatus  cytosol  plasma membrane  signal transduction  nervous system development  regulation of G-protein coupled receptor protein signaling pathway  cell differentiation  
Other databases
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
PubGeneGPSM1
iHOPGPSM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:48:07 CEST 2013
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