Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GPSM1 (G-protein signaling modulator 1)

Identity

Other namesAGS3
HGNC (Hugo) GPSM1
LocusID (NCBI) 26086
Location 9q34.3
Location_base_pair Starts at 139221932 and ends at 139254057 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GPSM1   17858
Cards
Entrez_Gene (NCBI)GPSM1  26086  G-protein signaling modulator 1
GeneCards (Weizmann)GPSM1
Ensembl (Hinxton)ENSG00000160360 [Gene_View]  chr9:139221932-139254057 [Contig_View]  GPSM1 [Vega]
ICGC DataPortalENSG00000160360
cBioPortalGPSM1
AceView (NCBI)GPSM1
Genatlas (Paris)GPSM1
WikiGenes26086
SOURCE (Princeton)NM_001145638 NM_001145639 NM_001200003 NM_015597
Genomic and cartography
GoldenPath (UCSC)GPSM1  -  9q34.3   chr9:139221932-139254057 +  9q34.3   [Description]    (hg19-Feb_2009)
EnsemblGPSM1 - 9q34.3 [CytoView]
Mapping of homologs : NCBIGPSM1 [Mapview]
OMIM609491   
Gene and transcription
Genbank (Entrez)AL117478 AL545250 AY173053 BC009943 BC009979
RefSeq transcript (Entrez)NM_001145638 NM_001145639 NM_001200003 NM_015597
RefSeq genomic (Entrez)AC_000141 NC_000009 NC_018920 NG_028088 NT_008470 NW_001839245 NW_004929369
Consensus coding sequences : CCDS (NCBI)GPSM1
Cluster EST : UnigeneHs.239370 [ NCBI ]
CGAP (NCI)Hs.239370
Alternative Splicing : Fast-db (Paris)GSHG0030584
Alternative Splicing GalleryENSG00000160360
Gene ExpressionGPSM1 [ NCBI-GEO ]     GPSM1 [ SEEK ]   GPSM1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86YR5 (Uniprot)
NextProtQ86YR5  [Medical]
With graphics : InterProQ86YR5
Splice isoforms : SwissVarQ86YR5 (Swissvar)
Domaine pattern : Prosite (Expaxy)GOLOCO (PS50877)    TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)G_prot_signal_mod_1 [organisation]   GoLoco_motif [organisation]   TPR-contain_dom [organisation]   TPR-like_helical [organisation]   TPR_1 [organisation]   TPR_repeat [organisation]  
Related proteins : CluSTrQ86YR5
Domain families : Pfam (Sanger)GoLoco (PF02188)    TPR_1 (PF00515)    TPR_7 (PF13176)   
Domain families : Pfam (NCBI)pfam02188    pfam00515    pfam13176   
Domain families : Smart (EMBL)GoLoco (SM00390)  TPR (SM00028)  
DMDM Disease mutations26086
Blocks (Seattle)Q86YR5
Human Protein AtlasENSG00000160360 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ86YR5
HPRD17075
IPIIPI00941917   IPI00004948   IPI00939203   IPI00956562   
Protein Interaction databases
DIP (DOE-UCLA)Q86YR5
IntAct (EBI)Q86YR5
FunCoupENSG00000160360
BioGRIDGPSM1
InParanoidQ86YR5
Interologous Interaction database Q86YR5
IntegromeDBGPSM1
STRING (EMBL)GPSM1
Ontologies - Pathways
Ontology : AmiGOGolgi membrane  GDP-dissociation inhibitor activity  endoplasmic reticulum membrane  cytosol  plasma membrane  nervous system development  regulation of G-protein coupled receptor protein signaling pathway  cell differentiation  regulation of catalytic activity  
Ontology : EGO-EBIGolgi membrane  GDP-dissociation inhibitor activity  endoplasmic reticulum membrane  cytosol  plasma membrane  nervous system development  regulation of G-protein coupled receptor protein signaling pathway  cell differentiation  regulation of catalytic activity  
Pathways : KEGGCocaine addiction   
Protein Interaction DatabaseGPSM1
Wikipedia pathwaysGPSM1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)GPSM1
snp3D : Map Gene to Disease26086
SNP (GeneSNP Utah)GPSM1
SNP : HGBaseGPSM1
Genetic variants : HAPMAPGPSM1
Exome VariantGPSM1
1000_GenomesGPSM1 
ICGC programENSG00000160360 
Somatic Mutations in Cancer : COSMICGPSM1 
CONAN: Copy Number AnalysisGPSM1 
Mutations and Diseases : HGMDGPSM1
Genomic VariantsGPSM1  GPSM1 [DGVbeta]
dbVarGPSM1
ClinVarGPSM1
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM609491   
MedgenGPSM1
GENETestsGPSM1
Disease Genetic AssociationGPSM1
Huge Navigator GPSM1 [HugePedia]  GPSM1 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneGPSM1
Homology/Alignments : Family Browser (UCSC)GPSM1
Phylogenetic Trees/Animal Genes : TreeFamGPSM1
Chemical/Protein Interactions : CTD26086
Chemical/Pharm GKB GenePA134986171
Clinical trialGPSM1
Cancer Resource (Charite)ENSG00000160360
Other databases
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
CoreMineGPSM1
iHOPGPSM1
OncoSearchGPSM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 30 13:56:54 CEST 2014

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