Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GPSM1 (G-protein signaling modulator 1)

Identity

Other namesAGS3
HGNC (Hugo) GPSM1
LocusID (NCBI) 26086
Atlas_Id 40746
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 139221932 and ends at 139254057 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GPSM1 (9q34.3) / NUP214 (9q34.13)GPSM1 (9q34.3) / TMEM94 (17q25.1)TSNAXIP1 (16q22.1) / GPSM1 (9q34.3)
GPSM1 9q34.3 / NUP214 9q34.13

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GPSM1   17858
Cards
Entrez_Gene (NCBI)GPSM1  26086  G-protein signaling modulator 1
AliasesAGS3
GeneCards (Weizmann)GPSM1
Ensembl hg19 (Hinxton)ENSG00000160360 [Gene_View]  chr9:139221932-139254057 [Contig_View]  GPSM1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000160360 [Gene_View]  chr9:139221932-139254057 [Contig_View]  GPSM1 [Vega]
ICGC DataPortalENSG00000160360
TCGA cBioPortalGPSM1
AceView (NCBI)GPSM1
Genatlas (Paris)GPSM1
WikiGenes26086
SOURCE (Princeton)GPSM1
Genomic and cartography
GoldenPath hg19 (UCSC)GPSM1  -     chr9:139221932-139254057 +  9q34.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GPSM1  -     9q34.3   [Description]    (hg38-Dec_2013)
EnsemblGPSM1 - 9q34.3 [CytoView hg19]  GPSM1 - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBIGPSM1 [Mapview hg19]  GPSM1 [Mapview hg38]
OMIM609491   
Gene and transcription
Genbank (Entrez)AL117478 AL545250 AY173053 BC009943 BC009979
RefSeq transcript (Entrez)NM_001145638 NM_001145639 NM_001200003 NM_015597
RefSeq genomic (Entrez)NC_000009 NC_018920 NG_028088 NT_008470 NW_004929369
Consensus coding sequences : CCDS (NCBI)GPSM1
Cluster EST : UnigeneHs.239370 [ NCBI ]
CGAP (NCI)Hs.239370
Alternative Splicing GalleryENSG00000160360
Gene ExpressionGPSM1 [ NCBI-GEO ]   GPSM1 [ EBI - ARRAY_EXPRESS ]   GPSM1 [ SEEK ]   GPSM1 [ MEM ]
Gene Expression Viewer (FireBrowse)GPSM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26086
GTEX Portal (Tissue expression)GPSM1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86YR5 (Uniprot)
NextProtQ86YR5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86YR5
Splice isoforms : SwissVarQ86YR5 (Swissvar)
PhosPhoSitePlusQ86YR5
Domaine pattern : Prosite (Expaxy)GOLOCO (PS50877)    TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)G_prot_signal_mod_1    GoLoco_motif    TPR-contain_dom    TPR-like_helical_dom    TPR_repeat   
Domain families : Pfam (Sanger)GoLoco (PF02188)   
Domain families : Pfam (NCBI)pfam02188   
Domain families : Smart (EMBL)GoLoco (SM00390)  TPR (SM00028)  
DMDM Disease mutations26086
Blocks (Seattle)GPSM1
SuperfamilyQ86YR5
Human Protein AtlasENSG00000160360
Peptide AtlasQ86YR5
HPRD17075
IPIIPI00941917   IPI00004948   IPI00939203   IPI00956562   
Protein Interaction databases
DIP (DOE-UCLA)Q86YR5
IntAct (EBI)Q86YR5
FunCoupENSG00000160360
BioGRIDGPSM1
STRING (EMBL)GPSM1
ZODIACGPSM1
Ontologies - Pathways
QuickGOQ86YR5
Ontology : AmiGOGolgi membrane  GDP-dissociation inhibitor activity  protein binding  endoplasmic reticulum membrane  cytosol  plasma membrane  nervous system development  regulation of G-protein coupled receptor protein signaling pathway  cell differentiation  regulation of catalytic activity  
Ontology : EGO-EBIGolgi membrane  GDP-dissociation inhibitor activity  protein binding  endoplasmic reticulum membrane  cytosol  plasma membrane  nervous system development  regulation of G-protein coupled receptor protein signaling pathway  cell differentiation  regulation of catalytic activity  
Pathways : KEGGCocaine addiction   
NDEx NetworkGPSM1
Atlas of Cancer Signalling NetworkGPSM1
Wikipedia pathwaysGPSM1
Orthology - Evolution
OrthoDB26086
GeneTree (enSembl)ENSG00000160360
Phylogenetic Trees/Animal Genes : TreeFamGPSM1
Homologs : HomoloGeneGPSM1
Homology/Alignments : Family Browser (UCSC)GPSM1
Gene fusions - Rearrangements
Fusion: TCGAGPSM1 9q34.3 NUP214 9q34.13 LGG
Polymorphisms : SNP, variants
NCBI Variation ViewerGPSM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GPSM1
dbVarGPSM1
ClinVarGPSM1
1000_GenomesGPSM1 
Exome Variant ServerGPSM1
ExAC (Exome Aggregation Consortium)GPSM1 (select the gene name)
Genetic variants : HAPMAP26086
Genomic Variants (DGV)GPSM1 [DGVbeta]
Mutations
ICGC Data PortalGPSM1 
TCGA Data PortalGPSM1 
Broad Tumor PortalGPSM1
OASIS PortalGPSM1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGPSM1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GPSM1
DgiDB (Drug Gene Interaction Database)GPSM1
DoCM (Curated mutations)GPSM1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GPSM1 (select a term)
intoGenGPSM1
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)9:139221932-139254057  ENSG00000160360
CONAN: Copy Number AnalysisGPSM1 
Mutations and Diseases : HGMDGPSM1
OMIM609491   
MedgenGPSM1
Genetic Testing Registry GPSM1
NextProtQ86YR5 [Medical]
TSGene26086
GENETestsGPSM1
Huge Navigator GPSM1 [HugePedia]
snp3D : Map Gene to Disease26086
BioCentury BCIQGPSM1
ClinGenGPSM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26086
Chemical/Pharm GKB GenePA134986171
Clinical trialGPSM1
Miscellaneous
canSAR (ICR)GPSM1 (select the gene name)
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGPSM1
EVEXGPSM1
GoPubMedGPSM1
iHOPGPSM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 19 18:51:38 CEST 2016

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