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GRAMD1A (GRAM domain containing 1A)

Identity

Alias_namesKIAA1533
KIAA1533
Alias_symbol (synonym)FLJ90346
Other alias
HGNC (Hugo) GRAMD1A
LocusID (NCBI) 57655
Atlas_Id 64025
Location 19q13.11  [Link to chromosome band 19q13]
Location_base_pair Starts at 35000320 and ends at 35026471 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GRAMD1A (19q13.11) / CARS (11p15.4)NDUFS5 (1p34.3) / GRAMD1A (19q13.11)TNFSF14 (19p13.3) / GRAMD1A (19q13.11)
ZNF585A (19q13.12) / GRAMD1A (19q13.11)ZNF585A GRAMD1ATNFSF14 GRAMD1A

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GRAMD1A   29305
Cards
Entrez_Gene (NCBI)GRAMD1A  57655  GRAM domain containing 1A
AliasesKIAA1533
GeneCards (Weizmann)GRAMD1A
Ensembl hg19 (Hinxton)ENSG00000089351 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000089351 [Gene_View]  chr19:35000320-35026471 [Contig_View]  GRAMD1A [Vega]
ICGC DataPortalENSG00000089351
TCGA cBioPortalGRAMD1A
AceView (NCBI)GRAMD1A
Genatlas (Paris)GRAMD1A
WikiGenes57655
SOURCE (Princeton)GRAMD1A
Genetics Home Reference (NIH)GRAMD1A
Genomic and cartography
GoldenPath hg38 (UCSC)GRAMD1A  -     chr19:35000320-35026471 +  19q13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GRAMD1A  -     19q13.11   [Description]    (hg19-Feb_2009)
EnsemblGRAMD1A - 19q13.11 [CytoView hg19]  GRAMD1A - 19q13.11 [CytoView hg38]
Mapping of homologs : NCBIGRAMD1A [Mapview hg19]  GRAMD1A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB040966 AK026064 AK074827 AK074864 AK074914
RefSeq transcript (Entrez)NM_001136199 NM_001320034 NM_001320035 NM_001320036 NM_020895
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GRAMD1A
Cluster EST : UnigeneHs.515351 [ NCBI ]
CGAP (NCI)Hs.515351
Alternative Splicing GalleryENSG00000089351
Gene ExpressionGRAMD1A [ NCBI-GEO ]   GRAMD1A [ EBI - ARRAY_EXPRESS ]   GRAMD1A [ SEEK ]   GRAMD1A [ MEM ]
Gene Expression Viewer (FireBrowse)GRAMD1A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57655
GTEX Portal (Tissue expression)GRAMD1A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96CP6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96CP6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96CP6
Splice isoforms : SwissVarQ96CP6
PhosPhoSitePlusQ96CP6
Domaine pattern : Prosite (Expaxy)VAST (PS51778)   
Domains : Interpro (EBI)DUF4782    GRAM   
Domain families : Pfam (Sanger)DUF4782 (PF16016)    GRAM (PF02893)   
Domain families : Pfam (NCBI)pfam16016    pfam02893   
Domain families : Smart (EMBL)GRAM (SM00568)  
Conserved Domain (NCBI)GRAMD1A
DMDM Disease mutations57655
Blocks (Seattle)GRAMD1A
SuperfamilyQ96CP6
Human Protein AtlasENSG00000089351
Peptide AtlasQ96CP6
HPRD11153
IPIIPI00180434   IPI00845289   IPI00168347   IPI01013760   IPI01015758   
Protein Interaction databases
DIP (DOE-UCLA)Q96CP6
IntAct (EBI)Q96CP6
FunCoupENSG00000089351
BioGRIDGRAMD1A
STRING (EMBL)GRAMD1A
ZODIACGRAMD1A
Ontologies - Pathways
QuickGOQ96CP6
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkGRAMD1A
Atlas of Cancer Signalling NetworkGRAMD1A
Wikipedia pathwaysGRAMD1A
Orthology - Evolution
OrthoDB57655
GeneTree (enSembl)ENSG00000089351
Phylogenetic Trees/Animal Genes : TreeFamGRAMD1A
HOVERGENQ96CP6
HOGENOMQ96CP6
Homologs : HomoloGeneGRAMD1A
Homology/Alignments : Family Browser (UCSC)GRAMD1A
Gene fusions - Rearrangements
Fusion: TCGAZNF585A GRAMD1A
Fusion: TCGATNFSF14 GRAMD1A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGRAMD1A [hg38]
dbSNP Single Nuclentidå Pklymorphism (NCBI)GRAMD1A
dbVarGRAMD1A
ClinVarGRAMD1A
1000_GenomesGRAMD1A 
Exome Variant ServerGRAMD1A
ExAC (Exome Aggregation Consortium)GRAMD1A (select the gene name)
Genetic variants : HAPMAP57655
Genomic Variants (DGV)GRAMD1A [DGVbeta]
DECIPHERGRAMD1A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGRAMD1A 
Mutations
ICGC Data PortalGRAMD1A 
TCGA Data PortalGRAMD1A 
Broad Tumor PortalGRAMD1A
OASIS PortalGRAMD1A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGRAMD1A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGRAMD1A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GRAMD1A
DgiDB (Drug Gene Interaction Database)GRAMD1A
DoCM (Curated mutations)GRAMD1A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GRAMD1A (select a term)
intoGenGRAMD1A
Cancer3DGRAMD1A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGRAMD1A
Genetic Testing Registry GRAMD1A
NextProtQ96CP6 [Medical]
TSGene57655
GENETestsGRAMD1A
Target ValidationGRAMD1A
Huge Navigator GRAMD1A [HugePedia]
snp3D : Map Gene to Disease57655
BioCentury BCIQGRAMD1A
ClinGenGRAMD1A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57655
Chemical/Pharm GKB GenePA134869487
Clinical trialGRAMD1A
Miscellaneous
canSAR (ICR)GRAMD1A (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGRAMD1A
EVEXGRAMD1A
GoPubMedGRAMD1A
iHOPGRAMD1A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:09:52 CEST 2017

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