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GRAMD1B (GRAM domain containing 1B)

Identity

Alias_symbol (synonym)KIAA1201
Other alias-
HGNC (Hugo) GRAMD1B
LocusID (NCBI) 57476
Atlas_Id 64026
Location 11q24.1  [Link to chromosome band 11q24]
Location_base_pair Starts at 123525636 and ends at 123627771 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DOCK9 (13q32.3) / GRAMD1B (11q24.1)GRAMD1B (11q24.1) / BRINP3 (1q31.1)GRAMD1B (11q24.1) / GRAMD1B (11q24.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GRAMD1B   29214
Cards
Entrez_Gene (NCBI)GRAMD1B  57476  GRAM domain containing 1B
Aliases
GeneCards (Weizmann)GRAMD1B
Ensembl hg19 (Hinxton)ENSG00000023171 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000023171 [Gene_View]  chr11:123525636-123627771 [Contig_View]  GRAMD1B [Vega]
ICGC DataPortalENSG00000023171
TCGA cBioPortalGRAMD1B
AceView (NCBI)GRAMD1B
Genatlas (Paris)GRAMD1B
WikiGenes57476
SOURCE (Princeton)GRAMD1B
Genetics Home Reference (NIH)GRAMD1B
Genomic and cartography
GoldenPath hg38 (UCSC)GRAMD1B  -     chr11:123525636-123627771 +  11q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GRAMD1B  -     11q24.1   [Description]    (hg19-Feb_2009)
EnsemblGRAMD1B - 11q24.1 [CytoView hg19]  GRAMD1B - 11q24.1 [CytoView hg38]
Mapping of homologs : NCBIGRAMD1B [Mapview hg19]  GRAMD1B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB033027 AI815988 AK127457 AK297606 AK307795
RefSeq transcript (Entrez)NM_001286563 NM_001286564 NM_001330396 NM_020716
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GRAMD1B
Cluster EST : UnigeneHs.732509 [ NCBI ]
CGAP (NCI)Hs.732509
Alternative Splicing GalleryENSG00000023171
Gene ExpressionGRAMD1B [ NCBI-GEO ]   GRAMD1B [ EBI - ARRAY_EXPRESS ]   GRAMD1B [ SEEK ]   GRAMD1B [ MEM ]
Gene Expression Viewer (FireBrowse)GRAMD1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57476
GTEX Portal (Tissue expression)GRAMD1B
Human Protein AtlasENSG00000023171-GRAMD1B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3KR37   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3KR37  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3KR37
Splice isoforms : SwissVarQ3KR37
PhosPhoSitePlusQ3KR37
Domaine pattern : Prosite (Expaxy)VAST (PS51778)   
Domains : Interpro (EBI)DUF4782    GRAM   
Domain families : Pfam (Sanger)DUF4782 (PF16016)    GRAM (PF02893)   
Domain families : Pfam (NCBI)pfam16016    pfam02893   
Domain families : Smart (EMBL)GRAM (SM00568)  
Conserved Domain (NCBI)GRAMD1B
DMDM Disease mutations57476
Blocks (Seattle)GRAMD1B
SuperfamilyQ3KR37
Human Protein Atlas [tissue]ENSG00000023171-GRAMD1B [tissue]
Peptide AtlasQ3KR37
IPIIPI00939399   IPI00432073   IPI00845280   IPI00008177   IPI00982664   
Protein Interaction databases
DIP (DOE-UCLA)Q3KR37
IntAct (EBI)Q3KR37
FunCoupENSG00000023171
BioGRIDGRAMD1B
STRING (EMBL)GRAMD1B
ZODIACGRAMD1B
Ontologies - Pathways
QuickGOQ3KR37
Ontology : AmiGOmembrane  integral component of membrane  
Ontology : EGO-EBImembrane  integral component of membrane  
NDEx NetworkGRAMD1B
Atlas of Cancer Signalling NetworkGRAMD1B
Wikipedia pathwaysGRAMD1B
Orthology - Evolution
OrthoDB57476
GeneTree (enSembl)ENSG00000023171
Phylogenetic Trees/Animal Genes : TreeFamGRAMD1B
HOVERGENQ3KR37
HOGENOMQ3KR37
Homologs : HomoloGeneGRAMD1B
Homology/Alignments : Family Browser (UCSC)GRAMD1B
Gene fusions - Rearrangements
Tumor Fusion PortalGRAMD1B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGRAMD1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GRAMD1B
dbVarGRAMD1B
ClinVarGRAMD1B
1000_GenomesGRAMD1B 
Exome Variant ServerGRAMD1B
ExAC (Exome Aggregation Consortium)ENSG00000023171
GNOMAD BrowserENSG00000023171
Genetic variants : HAPMAP57476
Genomic Variants (DGV)GRAMD1B [DGVbeta]
DECIPHERGRAMD1B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGRAMD1B 
Mutations
ICGC Data PortalGRAMD1B 
TCGA Data PortalGRAMD1B 
Broad Tumor PortalGRAMD1B
OASIS PortalGRAMD1B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGRAMD1B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGRAMD1B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GRAMD1B
DgiDB (Drug Gene Interaction Database)GRAMD1B
DoCM (Curated mutations)GRAMD1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GRAMD1B (select a term)
intoGenGRAMD1B
Cancer3DGRAMD1B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETGRAMD1B
MedgenGRAMD1B
Genetic Testing Registry GRAMD1B
NextProtQ3KR37 [Medical]
TSGene57476
GENETestsGRAMD1B
Target ValidationGRAMD1B
Huge Navigator GRAMD1B [HugePedia]
snp3D : Map Gene to Disease57476
BioCentury BCIQGRAMD1B
ClinGenGRAMD1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57476
Chemical/Pharm GKB GenePA142671708
Clinical trialGRAMD1B
Miscellaneous
canSAR (ICR)GRAMD1B (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGRAMD1B
EVEXGRAMD1B
GoPubMedGRAMD1B
iHOPGRAMD1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:23:29 CET 2017

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